Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  522 bits (1344), Expect = e-152
 Identities = 279/530 (52%), Positives = 389/530 (73%), Gaps = 9/530 (1%)

Query: 1   MSPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLL 60
           MS N L+++R+LSV+F  ND  V  V+N+  DIRPGE LA+VGESGSGKSV+ ++++QLL
Sbjct: 7   MSDN-LIEIRDLSVAF--NDQTV--VRNLCLDIRPGECLALVGESGSGKSVTAHSILQLL 61

Query: 61  PKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAI 120
           P+N   H   SI + G+EL+      +R +RG+RI MIFQEPMTSLNP   V  Q+ E +
Sbjct: 62  PEN-EAHTSGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETL 120

Query: 121 RCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILI 180
             H+ +    A+QR+LEL  LV + +P    + +PH+ SGGQ QR++IAMAL  EP++LI
Sbjct: 121 MLHKGLGGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLI 180

Query: 181 ADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQG 240
           ADEPTTALDVTVQ ++L L+K +Q  +GM++L I+HDL +V+ +A RV VM  G++VEQ 
Sbjct: 181 ADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQA 240

Query: 241 STEQLFLQPEHDYTRMLINSIPKGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQYF 300
             E LF  P+H Y+  L+++ P+G   P   D   +L+ +D+RV F +    + RR +Y 
Sbjct: 241 PCETLFSAPKHPYSCELLHAEPEGEALP-RDDREEVLQVQDLRVSFPLSG-GLFRRKEYL 298

Query: 301 EAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLLPSTGQIAFKGQDFRALSEKQRLA 360
            AV GISL +++G+TLGIVGESGSGKSTLG+A++ L+ S G I F+GQ    LS+K    
Sbjct: 299 RAVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRLIESEGSIRFQGQALDHLSQKALRP 358

Query: 361 LKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSI 420
            +K +Q+VFQDP+GSLSPRM+V +II+EGL VHQP  S  +   R  +AL+EV LDP + 
Sbjct: 359 WRKQMQVVFQDPFGSLSPRMSVQQIISEGLEVHQPS-SPEQCEARVIQALKEVGLDPATR 417

Query: 421 NRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGY 480
           +RYPHEFSGGQRQRIAIARAL+L+P+ ILLDEPTSALDR+VQ  V+ LL+++Q++ ++ Y
Sbjct: 418 HRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQKYDLTY 477

Query: 481 LFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAAS 530
           LFISHDLAVV+AL+  ++V++ G+V+EQG++  +F +PQH YTK+L+AA+
Sbjct: 478 LFISHDLAVVRALAHDMIVIKDGKVVEQGASHDVFDSPQHPYTKELLAAA 527



 Score =  178 bits (452), Expect = 4e-49
 Identities = 106/265 (40%), Positives = 166/265 (62%), Gaps = 15/265 (5%)

Query: 6   LLQVRNLSVSFTTNDGV------VDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQL 59
           +LQV++L VSF  + G+      + AV  +S  I+ G+TL IVGESGSGKS    A+++L
Sbjct: 275 VLQVQDLRVSFPLSGGLFRRKEYLRAVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRL 334

Query: 60  LPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEA 119
                 I  E SI F+G+ L + +   +R  R  ++ ++FQ+P  SL+P M V   ++E 
Sbjct: 335 ------IESEGSIRFQGQALDHLSQKALRPWR-KQMQVVFQDPFGSLSPRMSVQQIISEG 387

Query: 120 IRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDIL 179
           +  H+  S  Q + RV++  + V L DP   + ++PHEFSGGQ QRI IA AL+ +P ++
Sbjct: 388 LEVHQPSSPEQCEARVIQALKEVGL-DPATRH-RYPHEFSGGQRQRIAIARALVLKPALI 445

Query: 180 IADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQ 239
           + DEPT+ALD TVQ +V+ L++++Q    +  LFI+HDL VV+ +A  ++V+  G VVEQ
Sbjct: 446 LLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKVVEQ 505

Query: 240 GSTEQLFLQPEHDYTRMLINSIPKG 264
           G++  +F  P+H YT+ L+ +   G
Sbjct: 506 GASHDVFDSPQHPYTKELLAAAHPG 530