Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., peptide transport ATP-binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  477 bits (1227), Expect = e-139
 Identities = 261/542 (48%), Positives = 354/542 (65%), Gaps = 19/542 (3%)

Query: 6   LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNAR 65
           LL V++L+V   T  G    V+ +SFD+ PG TL + GESGSGKS++  +LMQLLPK   
Sbjct: 5   LLSVKDLTVQVATPTGPKVVVERLSFDLLPGRTLCLAGESGSGKSMTALSLMQLLPKPMA 64

Query: 66  IHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRN 125
                S   +GE++L   + +MRRIRG +IGMIFQEPMTSLNP M VG Q+  AI  H N
Sbjct: 65  RIAGGSATLDGEDILALPEARMRRIRGRKIGMIFQEPMTSLNPVMTVGNQLIGAITAHGN 124

Query: 126 VS-QNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEP 184
            S +  A+ R  EL   V +P+P+    ++PHE SGG  QRI+IAMAL   P ILIADEP
Sbjct: 125 TSGRRAARARAAELLDQVQIPEPERRLGQYPHELSGGLRQRIVIAMALAQNPKILIADEP 184

Query: 185 TTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQ 244
           TTALDVTVQA++L LI+++QA+ G++++ ITHD+GVV  +AD VLVM  G  VE  ++  
Sbjct: 185 TTALDVTVQAQILALIRKLQADHGISVIMITHDMGVVAEMADEVLVMKHGRTVEHATSRD 244

Query: 245 LFLQPEHDYTRMLINSIPK-----GSKDP-----VAVDAA-------PLLKAEDIRVKFL 287
           LF  P+  YT+ L++++P+     G++ P      AV+A        P+L+ E++ V+F 
Sbjct: 245 LFAHPQDAYTKELLSAVPRLGEMAGTETPKRAAGKAVEAGSEPGAEQPMLQVENLTVRFD 304

Query: 288 VKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLLPSTGQIAFKG 347
           +K   + R  +   AV+GISL +++GETL +VGESG GKST G+AL+ L+P TG I   G
Sbjct: 305 IKGGILQRPVRRLHAVEGISLSVRRGETLSLVGESGCGKSTTGKALLNLVPWTGDIRVDG 364

Query: 348 QDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRAR 407
           +  R L       + +D+QM+FQDPY SL PRM VG+++ E L++H    S  E   R  
Sbjct: 365 RSTRGLRGSTMRPILRDVQMIFQDPYASLDPRMRVGDLVAEPLVIH-GLASGSELRDRVE 423

Query: 408 RALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIE 467
              + V L P  + RYPHEFSGGQRQRI IARAL L P  I+ DE  +ALD S+Q  V++
Sbjct: 424 YLFKRVGLSPEQMKRYPHEFSGGQRQRICIARALSLSPKLIVADESVAALDVSIQAQVLD 483

Query: 468 LLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLI 527
           LL++IQ    + YLFISHD+AVV+ +S RV VM  G+ +E G+   IF +PQH YTKKL+
Sbjct: 484 LLQDIQDETGVSYLFISHDMAVVEQISHRVAVMYMGRFVEMGTRRQIFESPQHPYTKKLM 543

Query: 528 AA 529
           AA
Sbjct: 544 AA 545



 Score =  197 bits (502), Expect = 7e-55
 Identities = 119/285 (41%), Positives = 169/285 (59%), Gaps = 18/285 (6%)

Query: 5   PLLQVRNLSVSFTTNDGVVD-------AVKNVSFDIRPGETLAIVGESGSGKSVSTNALM 57
           P+LQV NL+V F    G++        AV+ +S  +R GETL++VGESG GKS +  AL+
Sbjct: 292 PMLQVENLTVRFDIKGGILQRPVRRLHAVEGISLSVRRGETLSLVGESGCGKSTTGKALL 351

Query: 58  QLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVA 117
            L+P          I  +G        + MR I  D + MIFQ+P  SL+P MRVG  VA
Sbjct: 352 NLVPWTG------DIRVDGRSTRGLRGSTMRPILRD-VQMIFQDPYASLDPRMRVGDLVA 404

Query: 118 EAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPD 177
           E +  H   S ++ + RV  LF+ V L   +   +++PHEFSGGQ QRI IA AL   P 
Sbjct: 405 EPLVIHGLASGSELRDRVEYLFKRVGLSPEQ--MKRYPHEFSGGQRQRICIARALSLSPK 462

Query: 178 ILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVV 237
           +++ADE   ALDV++QA+VL L+++IQ   G++ LFI+HD+ VV+ ++ RV VM  G  V
Sbjct: 463 LIVADESVAALDVSIQAQVLDLLQDIQDETGVSYLFISHDMAVVEQISHRVAVMYMGRFV 522

Query: 238 EQGSTEQLFLQPEHDYTRMLINSIPKGSKDPVAVDAAPLLKAEDI 282
           E G+  Q+F  P+H YT+ L+ ++P      V  D  P  KAED+
Sbjct: 523 EMGTRRQIFESPQHPYTKKLMAAVPVADPGRVRRDFVP--KAEDL 565