Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  533 bits (1372), Expect = e-156
 Identities = 285/530 (53%), Positives = 368/530 (69%), Gaps = 3/530 (0%)

Query: 5   PLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNA 64
           PLL V NL V F      VDAV+ VSF I  GETLA+VGESGSGKSV+  ++ +LLP   
Sbjct: 16  PLLSVENLQVRFGAGPEAVDAVRGVSFTIAKGETLALVGESGSGKSVTALSITRLLPYPP 75

Query: 65  RIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHR 124
             HP  +I F+ E+LL+    ++R +RG+RI MIFQEPMTSLNP   +  QV E +  H+
Sbjct: 76  ASHPGGAIFFDSEDLLHAPGARLRDVRGNRISMIFQEPMTSLNPLHSIERQVGEVLTLHK 135

Query: 125 NVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEP 184
            +     + RV++L +LV LP  +G     PHE SGGQ QR+MIAMAL NEPD+LIADEP
Sbjct: 136 GLHGKARRARVIDLLRLVGLPQVEGRLGALPHELSGGQRQRVMIAMALANEPDLLIADEP 195

Query: 185 TTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQ 244
           TTALDVT+QA++L L+ ++Q   GMAILFITHDL +V+ VADRV VM  G +VE G+T  
Sbjct: 196 TTALDVTIQAQILALLADLQKRFGMAILFITHDLSIVRRVADRVAVMKDGLIVETGTTAA 255

Query: 245 LFLQPEHDYTRMLINSIPKGSKDPVAVDAAP-LLKAEDIRVKFLVKPYFISRRNQYFEAV 303
           LF  P H YT+ L+ S P+G+  P  V  AP +L  +D++V F ++   I R   + +AV
Sbjct: 256 LFAAPSHPYTKALLASEPRGT--PRLVPNAPEILSCDDLKVWFPIRKGVIRRTVGHIKAV 313

Query: 304 KGISLELKQGETLGIVGESGSGKSTLGRALIGLLPSTGQIAFKGQDFRALSEKQRLALKK 363
            GIS  LK GETLG+VGESGSGK+TLG  L+ L+ S G I F G     LS      L++
Sbjct: 314 DGISFSLKAGETLGVVGESGSGKTTLGLGLLRLVSSQGAIVFSGTRLDGLSNTAMRPLRR 373

Query: 364 DIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSINRY 423
            +Q+VFQDPYGSLSPR++VGEII EGL VH     +  R     +AL EV LDP + +RY
Sbjct: 374 RLQIVFQDPYGSLSPRLSVGEIIGEGLAVHGLAGDRAGRRALVTQALSEVGLDPATQDRY 433

Query: 424 PHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFI 483
           PHEFSGGQRQRIAIARAL+L+P  I+LDEPTSALD +VQ  +++LL++IQ R  I Y+FI
Sbjct: 434 PHEFSGGQRQRIAIARALVLKPEVIVLDEPTSALDVTVQAQIVDLLRDIQTRHAIAYVFI 493

Query: 484 SHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAASFDI 533
           SHDL VV+AL+ +VLVM+ G+V+E GS E IF  P+H+YT+ L+AA+  +
Sbjct: 494 SHDLRVVRALAAQVLVMKDGKVVEAGSGEQIFQAPRHDYTRALLAAALSL 543



 Score =  171 bits (433), Expect = 7e-47
 Identities = 104/274 (37%), Positives = 156/274 (56%), Gaps = 23/274 (8%)

Query: 268 PVAVDAAPLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKS 327
           PVA    PLL  E+++V+F   P       +  +AV+G+S  + +GETL +VGESGSGKS
Sbjct: 9   PVAPLLPPLLSVENLQVRFGAGP-------EAVDAVRGVSFTIAKGETLALVGESGSGKS 61

Query: 328 TLGRALIGLLP------STGQIAFKGQD-FRALSEKQRLALKKDIQMVFQDPYGSLSPRM 380
               ++  LLP        G I F  +D   A   + R      I M+FQ+P  SL+P  
Sbjct: 62  VTALSITRLLPYPPASHPGGAIFFDSEDLLHAPGARLRDVRGNRISMIFQEPMTSLNPLH 121

Query: 381 TVGEIITEGLLVHQPHISKLERMQRARRALEEVRL-----DPNSINRYPHEFSGGQRQRI 435
           ++   + E L +H+     L    R  R ++ +RL         +   PHE SGGQRQR+
Sbjct: 122 SIERQVGEVLTLHK----GLHGKARRARVIDLLRLVGLPQVEGRLGALPHELSGGQRQRV 177

Query: 436 AIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSD 495
            IA AL  EP  ++ DEPT+ALD ++Q  ++ LL ++QKR  +  LFI+HDL++V+ ++D
Sbjct: 178 MIAMALANEPDLLIADEPTTALDVTIQAQILALLADLQKRFGMAILFITHDLSIVRRVAD 237

Query: 496 RVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAA 529
           RV VM+ G ++E G+  ++F  P H YTK L+A+
Sbjct: 238 RVAVMKDGLIVETGTTAALFAAPSHPYTKALLAS 271