Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  437 bits (1123), Expect = e-127
 Identities = 244/528 (46%), Positives = 336/528 (63%), Gaps = 6/528 (1%)

Query: 4   NPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKN 63
           +P L + +L V+   +     A+  +S  +   E + +VGESGSGKS++  A+M+LL  +
Sbjct: 10  SPRLIIDDLRVALPKSADRPFALNGISLTVGADEIVCLVGESGSGKSMTAGAIMRLLGPS 69

Query: 64  ARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCH 123
             I     I+ EG +LL  ++  MR +RG R+GMIFQEPMT+LNP   +G Q+AE  R H
Sbjct: 70  TPI-TGGRILLEGVDLLGLSEAAMRAVRGARVGMIFQEPMTALNPLHTIGDQIAETFRTH 128

Query: 124 RNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADE 183
             + + + ++RVL+L   V +PDP  A + +PHE SGGQ QR MIAMAL  EP +LIADE
Sbjct: 129 GTLGRAEIERRVLDLLAEVLIPDPVAAAKAYPHELSGGQRQRAMIAMALALEPALLIADE 188

Query: 184 PTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTE 243
           PTTALDVT QA++L LI+++Q   G  +LF+THD GVV  +ADRV VM  G+VVE+G+  
Sbjct: 189 PTTALDVTTQAQILALIRDLQRRKGTGVLFVTHDFGVVAEIADRVAVMRGGEVVEEGAAA 248

Query: 244 QLFLQPEHDYTRMLINSIPK-GSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQYFEA 302
           Q+   P H YTR LI ++P      P  V   PLL+ E +   +    +F  R  +   A
Sbjct: 249 QVLNHPLHPYTRALIAAVPPLVPAPPRPVTGPPLLRVEGLSKTYRSGGFF-GRGGRVTHA 307

Query: 303 VKGISLELKQGETLGIVGESGSGKSTLGRALIGLLPS-TGQIAFKGQDFRALSEKQRLAL 361
           VK +S  L++G TLGIVGESGSGKSTL R ++ LL S +G I     D  AL++      
Sbjct: 308 VKDVSFTLRRGATLGIVGESGSGKSTLARCVVRLLTSESGSIHLDDIDLSALTDNDWHRE 367

Query: 362 KKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSIN 421
            + IQMVFQDPYGSL+PR  VGE++ +G +V      ++E   R R     V LDP +++
Sbjct: 368 SRRIQMVFQDPYGSLNPRRRVGELVAQGPIVRGAPRREVE--ARVRELFALVGLDPKAVD 425

Query: 422 RYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYL 481
           R+PHEFSGGQRQRI +ARAL L+P  ++ DE  SALD SVQ  V+ LL ++++R N+  L
Sbjct: 426 RFPHEFSGGQRQRIGLARALALDPDVLVADEAVSALDVSVQAQVLALLADLRERLNLSVL 485

Query: 482 FISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAA 529
           FI+HDL V   ++D +LVM+ G V+E G    +F +P H YTK L+AA
Sbjct: 486 FITHDLRVAGQIADDILVMKDGAVVEAGPTARVFADPHHPYTKTLMAA 533



 Score =  194 bits (494), Expect = 6e-54
 Identities = 120/264 (45%), Positives = 162/264 (61%), Gaps = 15/264 (5%)

Query: 5   PLLQVRNLSVSFTTND------GVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQ 58
           PLL+V  LS ++ +         V  AVK+VSF +R G TL IVGESGSGKS     +++
Sbjct: 281 PLLRVEGLSKTYRSGGFFGRGGRVTHAVKDVSFTLRRGATLGIVGESGSGKSTLARCVVR 340

Query: 59  LLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAE 118
           LL   +      SI  +  +L   TD    R    RI M+FQ+P  SLNP  RVG  VA+
Sbjct: 341 LLTSES-----GSIHLDDIDLSALTDNDWHR-ESRRIQMVFQDPYGSLNPRRRVGELVAQ 394

Query: 119 AIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDI 178
                R   + + + RV ELF LV L DPK A  +FPHEFSGGQ QRI +A AL  +PD+
Sbjct: 395 G-PIVRGAPRREVEARVRELFALVGL-DPK-AVDRFPHEFSGGQRQRIGLARALALDPDV 451

Query: 179 LIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVE 238
           L+ADE  +ALDV+VQA+VL L+ +++  + +++LFITHDL V   +AD +LVM  G VVE
Sbjct: 452 LVADEAVSALDVSVQAQVLALLADLRERLNLSVLFITHDLRVAGQIADDILVMKDGAVVE 511

Query: 239 QGSTEQLFLQPEHDYTRMLINSIP 262
            G T ++F  P H YT+ L+ ++P
Sbjct: 512 AGPTARVFADPHHPYTKTLMAAVP 535