Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  439 bits (1130), Expect = e-127
 Identities = 236/532 (44%), Positives = 346/532 (65%), Gaps = 8/532 (1%)

Query: 2   SPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLP 61
           +P  +L VR+L+++         AV ++SFD+ PG+ + ++GESGSGKSV  +A+M LLP
Sbjct: 6   APPMVLSVRDLTIALPPGADRPHAVSDISFDVPPGKVVCLLGESGSGKSVIASAIMGLLP 65

Query: 62  KNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIR 121
              R   + +I   G+ LL+ +   +R +RG  + M+FQEPMT+LNP M  G Q+ E + 
Sbjct: 66  PGLR-PVKGAIELRGQALLSCSQAALRALRGTTMAMVFQEPMTALNPVMTCGAQIDEMLA 124

Query: 122 CHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIA 181
            H    + + +  +L + + V LP+P+  Y  +PH+ SGGQ QRI+IAMALI +P +LI 
Sbjct: 125 QHVKRPKAERRAAILAIMERVRLPEPERIYASYPHQLSGGQRQRIVIAMALILKPALLIC 184

Query: 182 DEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGS 241
           DEPTTALDVT QAE+L+LI E+Q   G A+LFITHD GVV  +AD V+V+  G ++E+G 
Sbjct: 185 DEPTTALDVTTQAEILKLILELQRENGTAVLFITHDFGVVAEIADEVVVLELGAMIEKGD 244

Query: 242 TEQLFLQPEHDYTRMLINSIPKGSKD--PVAVDAAPLLKAEDIRVKFLVKPYFISRRNQY 299
              +   P   YT+ML+ ++P+ S    P   +A PLL+A+D+   ++   +   RR   
Sbjct: 245 KHAVLTAPRQPYTKMLLAAVPELSPPDRPAVENAYPLLQAKDLCKTYVSGGWPGKRR--V 302

Query: 300 FEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQDFRALSEKQR 358
            +A KG+SL ++ GET+GIVGESGSGKST+ R +  L+ P++G I   G+     ++++ 
Sbjct: 303 VQAAKGVSLMVRPGETIGIVGESGSGKSTVARCIARLIDPTSGDIFADGRSVATATKREL 362

Query: 359 LALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPN 418
              ++ +Q+VFQDPY SL+PR TVGE I EG +     + + E   +A   +  VRL P+
Sbjct: 363 SPFRRHVQVVFQDPYRSLNPRQTVGESIIEGPV--NFGVPRAEAWAKAEELMHLVRLKPD 420

Query: 419 SINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNI 478
           ++ RYP+EFSGGQRQRI+IARAL   P  ++ DE  SALD SVQ  ++ LL+EIQ R  I
Sbjct: 421 ALRRYPNEFSGGQRQRISIARALACNPKVLIADEAVSALDVSVQAQILTLLEEIQGRLRI 480

Query: 479 GYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAAS 530
           G LF++HDL V   + D VLVM KG+++E+G+   +F  P+H YT+KL+AAS
Sbjct: 481 GILFVTHDLRVASQICDHVLVMYKGEIVEEGAIRDVFFAPRHPYTRKLLAAS 532



 Score =  183 bits (464), Expect = 2e-50
 Identities = 112/265 (42%), Positives = 157/265 (59%), Gaps = 18/265 (6%)

Query: 5   PLLQVRNLSVSFTTNDG-----VVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQL 59
           PLLQ ++L  ++ +        VV A K VS  +RPGET+ IVGESGSGKS     + +L
Sbjct: 280 PLLQAKDLCKTYVSGGWPGKRRVVQAAKGVSLMVRPGETIGIVGESGSGKSTVARCIARL 339

Query: 60  LPKNARIHPESSIMF-EGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAE 118
                 I P S  +F +G  +   T  ++   R   + ++FQ+P  SLNP   VG  + E
Sbjct: 340 ------IDPTSGDIFADGRSVATATKRELSPFRR-HVQVVFQDPYRSLNPRQTVGESIIE 392

Query: 119 AIRCHRNVSQNQAKQRVLELFQLVHL-PDPKGAYQKFPHEFSGGQLQRIMIAMALINEPD 177
               +  V + +A  +  EL  LV L PD   A +++P+EFSGGQ QRI IA AL   P 
Sbjct: 393 G-PVNFGVPRAEAWAKAEELMHLVRLKPD---ALRRYPNEFSGGQRQRISIARALACNPK 448

Query: 178 ILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVV 237
           +LIADE  +ALDV+VQA++L L++EIQ  + + ILF+THDL V   + D VLVM KG++V
Sbjct: 449 VLIADEAVSALDVSVQAQILTLLEEIQGRLRIGILFVTHDLRVASQICDHVLVMYKGEIV 508

Query: 238 EQGSTEQLFLQPEHDYTRMLINSIP 262
           E+G+   +F  P H YTR L+ + P
Sbjct: 509 EEGAIRDVFFAPRHPYTRKLLAASP 533