Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., oligopeptide/dipeptide ABC transporter, ATP-binding protein from Phaeobacter inhibens DSM 17395

 Score =  517 bits (1331), Expect = e-151
 Identities = 258/528 (48%), Positives = 375/528 (71%), Gaps = 3/528 (0%)

Query: 3   PNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPK 62
           P PLL VR+L VSF  +  V +AV+ VSF +  GET+A+VGESGSGKSVS  + + LL  
Sbjct: 11  PTPLLSVRDLRVSFRQDGKVTEAVRGVSFSVGRGETVALVGESGSGKSVSALSTVSLLGD 70

Query: 63  NARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRC 122
           +A +    S+ ++G E++  ++  +R++RG+ I  IFQEPMTSLNP   +  Q+AE++  
Sbjct: 71  SATV--SGSVTYDGTEMVGASERHLRQVRGNDISFIFQEPMTSLNPLHTIEKQLAESLAL 128

Query: 123 HRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIAD 182
           H+ +    A++R+++L   V + D +     +PH+ SGGQ QR+MIAMAL N+PDILIAD
Sbjct: 129 HQGLGGAAARERIVDLLNRVGIRDAETRLDAYPHQLSGGQRQRVMIAMALANKPDILIAD 188

Query: 183 EPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGST 242
           EPTTALDVT+Q ++L L+ +++A+ GM +LFITHDL +V+ +ADRV VM  G++VE G T
Sbjct: 189 EPTTALDVTIQVQILDLLADLKASEGMGLLFITHDLSIVRRIADRVCVMQAGEIVESGPT 248

Query: 243 EQLFLQPEHDYTRMLINSIPKGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQYFEA 302
            ++F  P+H YTR L+++ P G   PV+ DA  L++ ED++V F ++  F+ R   + +A
Sbjct: 249 AEIFANPQHPYTRKLLDAEPTGQPQPVSKDAKELIRTEDLKVWFPIQKGFLKRTVGHVKA 308

Query: 303 VKGISLELKQGETLGIVGESGSGKSTLGRALIGLLPSTGQIAFKGQDFRALSEKQRLALK 362
           V   SL ++ GETLGIVGESGSGK+TL  A++ L+ S G++ F+GQD R  S +    L+
Sbjct: 309 VNPTSLSVRAGETLGIVGESGSGKTTLALAIMRLIASEGRVEFQGQDLRQWSTRDLRRLR 368

Query: 363 KDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSINR 422
            D+Q+VFQDP+G+LSPRMT  +II EGL +H     +  R       + EV LDP  ++R
Sbjct: 369 ADMQIVFQDPFGALSPRMTCAQIIAEGLAIHNVDQDRDPR-DLVAEVMSEVGLDPAFMDR 427

Query: 423 YPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLF 482
           YPHEFSGGQRQRIAIARA++L P  ++LDEPTSALD +VQ+ ++ LL+++Q+R  + YLF
Sbjct: 428 YPHEFSGGQRQRIAIARAMVLRPKLVVLDEPTSALDMTVQVQIVNLLRDLQERYGLAYLF 487

Query: 483 ISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAAS 530
           ISHDL VV+A+S +++VM++G V+E GSA  +F+NP   YT++L+AA+
Sbjct: 488 ISHDLNVVRAMSHKMIVMKQGDVVEAGSAAELFNNPSDPYTQQLLAAA 535



 Score =  182 bits (463), Expect = 2e-50
 Identities = 103/273 (37%), Positives = 158/273 (57%), Gaps = 15/273 (5%)

Query: 264 GSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESG 323
           G+   V     PLL   D+RV F        +  +  EAV+G+S  + +GET+ +VGESG
Sbjct: 2   GNSMTVTQKPTPLLSVRDLRVSF-------RQDGKVTEAVRGVSFSVGRGETVALVGESG 54

Query: 324 SGKSTLGRALIGLLPS----TGQIAFKGQDFRALSEKQ-RLALKKDIQMVFQDPYGSLSP 378
           SGKS    + + LL      +G + + G +    SE+  R     DI  +FQ+P  SL+P
Sbjct: 55  SGKSVSALSTVSLLGDSATVSGSVTYDGTEMVGASERHLRQVRGNDISFIFQEPMTSLNP 114

Query: 379 RMTVGEIITEGLLVHQPHISKLERMQRARRALEEV--RLDPNSINRYPHEFSGGQRQRIA 436
             T+ + + E L +HQ  +      +R    L  V  R     ++ YPH+ SGGQRQR+ 
Sbjct: 115 LHTIEKQLAESLALHQ-GLGGAAARERIVDLLNRVGIRDAETRLDAYPHQLSGGQRQRVM 173

Query: 437 IARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDR 496
           IA AL  +P  ++ DEPT+ALD ++Q+ +++LL +++    +G LFI+HDL++V+ ++DR
Sbjct: 174 IAMALANKPDILIADEPTTALDVTIQVQILDLLADLKASEGMGLLFITHDLSIVRRIADR 233

Query: 497 VLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAA 529
           V VMQ G+++E G    IF NPQH YT+KL+ A
Sbjct: 234 VCVMQAGEIVESGPTAEIFANPQHPYTRKLLDA 266