Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., Probable dipeptide-transport ATP-binding protein ABC transporter DppD from Mycobacterium tuberculosis H37Rv

 Score =  398 bits (1022), Expect = e-115
 Identities = 233/536 (43%), Positives = 327/536 (61%), Gaps = 19/536 (3%)

Query: 5   PLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNA 64
           PLL V  L V+F T+     AV  V   +R G+T+A+VGESGSGKS +  A++ LLP   
Sbjct: 7   PLLSVEGLEVTFGTD---APAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGG 63

Query: 65  RIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHR 124
           RI     ++F+G ++      ++R IRG  IG + Q+PMT+LNP  +VG QV EA+R   
Sbjct: 64  RI-TAGRVVFDGRDITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALRA-- 120

Query: 125 NVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEP 184
           N     A++R +EL     LPDP     ++PH+ SGG  QR +IA+ L   P +LIADEP
Sbjct: 121 NTDGRAARRRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEP 180

Query: 185 TTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQ 244
           T+ALDVTVQ +VL  ++ +   +G A+L ITHDL +    A+ V+V+ +G VVE G+ + 
Sbjct: 181 TSALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAAQS 240

Query: 245 LFLQPEHDYTRMLINSIP----KGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISR----R 296
           +   P+H+YTR L+ + P    +  + P +   A     + + V  L K Y  SR    R
Sbjct: 241 ILQSPQHEYTRRLVAAAPSLTARSRRPPESRSRATTQAGDILVVSELTKIYRESRGAPWR 300

Query: 297 NQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQ-DFRALS 354
                AV G+S  L +  TL IVGESGSGKSTL R ++GLL P++G + F G  D  AL+
Sbjct: 301 RVESRAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTSGTVVFDGTYDVGALA 360

Query: 355 EKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRAL-EEV 413
             Q LA ++ +Q VFQ+PY SL P  +V   I E L VH  H+    + QRA R L ++V
Sbjct: 361 RDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVH--HVGDRRQRQRAVRELVDQV 418

Query: 414 RLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQ 473
            L  + + R P E SGGQRQR+AIARAL L P  ++ DE  SALD  VQ  +++LL ++Q
Sbjct: 419 ALPSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDLLADLQ 478

Query: 474 KRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAA 529
               + YLFISHDLAV++ ++D VLVM+ G+V+E  S E +F  P+HEYT++L+ A
Sbjct: 479 ADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQLLQA 534



 Score =  168 bits (425), Expect = 6e-46
 Identities = 98/244 (40%), Positives = 140/244 (57%), Gaps = 7/244 (2%)

Query: 25  AVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNARIHPESSIMFEGEELLNKTD 84
           AV  VSF +    TLAIVGESGSGKS     ++ LL   +      +++F+G   +    
Sbjct: 306 AVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTS-----GTVVFDGTYDVGALA 360

Query: 85  TQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRNVSQNQAKQRVLELFQLVHL 144
                    R+  +FQ P +SL+P   V   + E +R H    + Q ++ V EL   V L
Sbjct: 361 RDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGDRRQRQRAVRELVDQVAL 420

Query: 145 PDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEPTTALDVTVQAEVLRLIKEIQ 204
           P       + P E SGGQ QR+ IA AL   P++L+ DE  +ALDV VQA++L L+ ++Q
Sbjct: 421 PS--SILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQILDLLADLQ 478

Query: 205 ANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQLFLQPEHDYTRMLINSIPKG 264
           A++G+  LFI+HDL V++ +AD VLVM  G VVE  STE++F +P H+YTR L+ +IP  
Sbjct: 479 ADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQLLQAIPGA 538

Query: 265 SKDP 268
              P
Sbjct: 539 PSAP 542



 Score =  163 bits (413), Expect = 1e-44
 Identities = 103/270 (38%), Positives = 154/270 (57%), Gaps = 21/270 (7%)

Query: 269 VAVDAAPLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKST 328
           ++V AAPLL  E + V F               AV G+ L ++ G+T+ +VGESGSGKST
Sbjct: 1   MSVPAAPLLSVEGLEVTFGTDA----------PAVCGVDLAVRSGQTVAVVGESGSGKST 50

Query: 329 LGRALIGLLPS-----TGQIAFKGQDFRALSEKQRLALK-KDIQMVFQDPYGSLSPRMTV 382
              A++GLLP+      G++ F G+D      K+  +++ ++I  V QDP  +L+P   V
Sbjct: 51  TAAAILGLLPAGGRITAGRVVFDGRDITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKV 110

Query: 383 GEIITEGLLVHQPHISKLERMQRARRALEEVRL-DP-NSINRYPHEFSGGQRQRIAIARA 440
           G  +TE L   + +       +RA   L E  L DP     RYPH+ SGG  QR  IA  
Sbjct: 111 GFQVTEAL---RANTDGRAARRRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIG 167

Query: 441 LILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVM 500
           L   P  ++ DEPTSALD +VQ  V++ L+ +        L I+HDLA+    ++ V+V+
Sbjct: 168 LAGRPRLLIADEPTSALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVV 227

Query: 501 QKGQVMEQGSAESIFHNPQHEYTKKLIAAS 530
           ++G V+E G+A+SI  +PQHEYT++L+AA+
Sbjct: 228 RRGVVVESGAAQSILQSPQHEYTRRLVAAA 257