Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  225 bits (573), Expect = 4e-63
 Identities = 154/481 (32%), Positives = 257/481 (53%), Gaps = 14/481 (2%)

Query: 76  IAQIDDTIYPLRISAVYAIYDAERRNNFIAE----LREGLTEVQSALSSIEQDAQFSRDV 131
           + Q++     +R S +  +       +  AE    LR+ L + +  L  + QD +    +
Sbjct: 54  LGQVNQEFLMIRASTLRLLISEPAERSRGAETLDGLRKTLAQERQDLDRLIQDTEGKALL 113

Query: 132 PVVKQSIEIYVAESQKMV--ALFNRLDQGLA-TREEANVFIQSFRETGNRMISAINDLSQ 188
               QS+  Y +  +++V  AL NR+++ +  TR E N   +S  +       A+ DL  
Sbjct: 114 ANFDQSLARYESFQRRIVELALQNRMEEAIEITRGELNEHARSTSK-------AVYDLIG 166

Query: 189 KVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKL 248
              + A  +   + +  A   +  ++ ++   + +++ A LL+  IV P+     V   +
Sbjct: 167 LNRNAANAASAHALEVAASAFQGVVVAMILAFIATIILAMLLTRSIVQPLAEAVGVAEVI 226

Query: 249 AQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAE 308
           A GDL+      G +E A+L   +      L  T++ ++  S ++ASA+ EL  V   + 
Sbjct: 227 AGGDLTRHFQVVGSDEPARLLSALQAMQRSLRETIQGISDSSNQLASAAEELNVVTEDST 286

Query: 309 SNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASE 368
                +  EIEQ A+AVNE+ +  D V+ NA +    +RE+DE A+ G      +  +  
Sbjct: 287 RGLHQQNHEIEQAATAVNEMTAAVDEVARNAVATSEASRESDETAQHGRQQVIRTVDSIG 346

Query: 369 QMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAV 428
            +A  +   A  V RL  Q   IS V++VIR +++QTNLLALNAAIEAARAG++GRGFAV
Sbjct: 347 LLADDVTQTATEVERLAGQVRDISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAV 406

Query: 429 VADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIG 488
           VADEVR LA RTQ ST+EI+ +I ++   +  A  +MQ S +       L   A +AL G
Sbjct: 407 VADEVRALAHRTQQSTQEIEQMIGDVHQGTDKAVHAMQLSNERARTTLELARAAGEALDG 466

Query: 489 ITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHL 548
           I  ++S I++ N  +A+A+E+Q+ V ++++RN+ N+  L  Q+  G +Q+++AS EL+ L
Sbjct: 467 IASAISQISERNLVIASASEEQAQVAREVDRNLVNIRDLSLQSSAGANQTSAASQELARL 526

Query: 549 A 549
           A
Sbjct: 527 A 527



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 40/232 (17%), Positives = 97/232 (41%), Gaps = 29/232 (12%)

Query: 177 NRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWL------- 229
           N M +A++++++     A  + E S +S+          + +V  + +LA  +       
Sbjct: 304 NEMTAAVDEVARN----AVATSEASRESDETAQHGRQQVIRTVDSIGLLADDVTQTATEV 359

Query: 230 --LSGQIVAPINSLQSVMRKLAQGDLSVKADA--------DGENEIAKLSQDVNTTVTQL 279
             L+GQ V  I+ +  V+R +A+    +  +A        D     A ++ +V     + 
Sbjct: 360 ERLAGQ-VRDISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRT 418

Query: 280 YTTVEQLTRISEEVASASTELAAVMTQAESNAQMELM-------EIEQVASAVNELASTA 332
             + +++ ++  +V   + +    M  +   A+  L         ++ +ASA+++++   
Sbjct: 419 QQSTQEIEQMIGDVHQGTDKAVHAMQLSNERARTTLELARAAGEALDGIASAISQISERN 478

Query: 333 DNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRL 384
             ++  +      ARE D    +   +  +SS  + Q + A  + AR+ + L
Sbjct: 479 LVIASASEEQAQVAREVDRNLVNIRDLSLQSSAGANQTSAASQELARLAIDL 530