Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  222 bits (566), Expect = 3e-62
 Identities = 144/440 (32%), Positives = 241/440 (54%), Gaps = 24/440 (5%)

Query: 122 EQDAQFSRDVPVVKQSIEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRETGNRMIS 181
           EQ AQF   +   + S++++ A +Q   ++   L     T + A +        G +M  
Sbjct: 225 EQIAQFESALRNYRSSVDVFKATTQTAASVRKDL-----TTQGATIVKLGEELYGLQMQM 279

Query: 182 AINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSL 241
              D          T+  +S Q   VV+         V++L +LAA +++ QI  P+   
Sbjct: 280 GKED----------TAHARSLQIGCVVL---------VMLLGILAAVIITRQITRPLRDT 320

Query: 242 QSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELA 301
            +++ ++A GDL+        +E+  L Q +    T L   +  +     ++ASA+ EL+
Sbjct: 321 LAIVERIASGDLTHTEAVTRRDELGVLQQGIQRMGTTLRELISGIRDGVTQIASAAEELS 380

Query: 302 AVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFK 361
           AV  Q  +    + +E +QVA+A++E+++T   V+ NA  A   A +AD+ A+ G  +  
Sbjct: 381 AVTEQTSAGVNSQKVETDQVATAMHEMSATVHEVARNAEQASVAASDADQQARDGDKVVG 440

Query: 362 ESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGE 421
           E+ Q  E++A  +  ++  +  L++ S++I  V++VI+ V++QTNLLALNAAIEAARAGE
Sbjct: 441 EAIQQIERLAAEVVRSSDAMNVLEQDSDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGE 500

Query: 422 SGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAK 481
           +GRGFAVVADEVR LA RTQ ST+EI+ ++  LQ  +   +  M  S  +   +  LT +
Sbjct: 501 AGRGFAVVADEVRGLAQRTQQSTEEIEGLVAALQNGTRQVSGIMLGSRTLTDSSVELTRR 560

Query: 482 ANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASA 541
           A  +L  IT +VS I   N Q+A AAEQQS V  +I+R++ N+  +  Q      ++A++
Sbjct: 561 AGTSLESITRTVSSIQAMNQQIAAAAEQQSSVADEISRSIVNVRDVSEQTAEASEETAAS 620

Query: 542 SNELSHLAEKQKAQLSFFKL 561
           S EL+ L  + +  +S F++
Sbjct: 621 SVELARLGGQLQMMVSHFRV 640