Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  236 bits (601), Expect = 2e-66
 Identities = 167/551 (30%), Positives = 291/551 (52%), Gaps = 23/551 (4%)

Query: 23  SLKNLSIRLQVLLPVLFTMIA-LVIALWITKVN----LTHEQQAIADNTHALVRYKDTIA 77
           SL+N++I  +  L   F MI  L++ L +  ++    +    + +AD+    ++  D  A
Sbjct: 2   SLRNMNIAPRAFLG--FAMIGTLMLILGVFALSQMSKIRSATEVLADSNVPSIKSLDRFA 59

Query: 78  QIDDTIYPLRISAVYAIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQS 137
           ++      LR+ +   + + +       E ++   E+ +  +    DAQ   +  +    
Sbjct: 60  EVS---IRLRVLSYRLLVNRD------PETQQKTIELMAMRNKQITDAQAVYEKLISTPD 110

Query: 138 IEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRETGNRMIS---AINDLSQKVNHYA 194
                ++  +++  + +L+  L T   AN   +      N M+S    +N + +K+    
Sbjct: 111 ERNLYSQYVQLLGQYRQLEDRLKTLTRANNIDELQGLLNNEMVSNSDQMNVVLRKLVDIN 170

Query: 195 TTSMEQSAQSNAVVMRNAMITVLSVL----MLSVLAAWLLSGQIVAPINSLQSVMRKLAQ 250
           T  + +  +  ++   +A   V+ +L    +L+++ AW+L   I  PI +       +AQ
Sbjct: 171 TAQLNEVKEQASIEYDSAFNMVIGLLIAATLLTLVFAWMLIKSITTPIATALLAAETIAQ 230

Query: 251 GDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESN 310
           G+L+     DG +E  +L   + T   +L  T++ ++  + ++ASA+ EL AV  ++   
Sbjct: 231 GNLTRPISIDGTDEAGRLLLAMKTMQDKLRDTLQGISGSATQLASAAEELNAVTDESARG 290

Query: 311 AQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQM 370
              +  EIEQ A+AVN++ S  + V+ NA+S    +R A   A  G  + +E+  A E+M
Sbjct: 291 LVQQNDEIEQAATAVNQMTSAVEEVARNATSTSQASRSAATSAGDGRDLVQETVSAIERM 350

Query: 371 ALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVA 430
           +  +   A +++ L  +S  I  V++VIRG++DQTNLLALNAAIEAARAGE+GRGFAVVA
Sbjct: 351 SGDVQGTAELIISLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVA 410

Query: 431 DEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGIT 490
           DEVR LA RTQ ST EI+ +I  +QT +  A  SM+ S +       +   A  AL  I 
Sbjct: 411 DEVRALAHRTQQSTSEIERMISSIQTGTEQAVSSMRNSTERAESTLNIAKGAGQALNTIN 470

Query: 491 ESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAE 550
            +V +IN+ N  +A+AAE+Q+ V ++++RN+ N+  L  Q+  G +Q+++AS ELS LA 
Sbjct: 471 SAVEEINERNMVIASAAEEQAQVAREVDRNLVNIRDLSAQSTNGANQTSAASTELSRLAI 530

Query: 551 KQKAQLSFFKL 561
                ++ F L
Sbjct: 531 DLNGMVARFAL 541