Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  231 bits (588), Expect = 7e-65
 Identities = 174/541 (32%), Positives = 287/541 (53%), Gaps = 27/541 (4%)

Query: 23  SLKNLSIRLQVLL---PVLFTMIALVIALWITKVNLTHEQQAIADNTHALVRYKDTI--A 77
           +L++LSI  +  L    +   +I L    ++   +L   +Q I +N+   V+  D I  A
Sbjct: 2   NLRSLSISRRASLCFGVITLLLIGLGAFSYVQIGHLRVAEQNIEENSLPSVQVVDDIQIA 61

Query: 78  QIDDTIYPLRISA-----VYAIYDAERRNNFIAELREGLTEVQSALSSIEQD-AQFSRDV 131
            +   +  +R+ A     V+A  +A+ R   I  LR      Q  L S E D AQF    
Sbjct: 62  LLHARLESIRMLASNDPSVHASAEAKVREA-IEALRANSDFYQKHLLSGEADRAQFEE-- 118

Query: 132 PVVKQSIEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKVN 191
                 + +Y+   +++VAL +      A  E A        E   +  +    L+    
Sbjct: 119 --ANNKMGVYIDGLKQVVALDS------ADHERAVSLANG--EQALKAAAYQEKLTALRG 168

Query: 192 HYATTSMEQSAQSNAVVMRNA---MITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKL 248
           H A  ++     + AV   +    MI +++  +L+V+ A  L+  IV PI++   +   +
Sbjct: 169 HNAEEAVVSGKDATAVYDHSVNVLMIVLIAAFLLTVVLAIALTRSIVDPISASLKLAEDI 228

Query: 249 AQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAE 308
           A GDL+ +    G +E ++L   +NT    L TT+ +++  S ++++A+ E+ ++   A+
Sbjct: 229 AAGDLTRQLSVSGSDEASRLMTALNTMSGNLRTTIHEISGASAQLSTAAVEMTSITESAD 288

Query: 309 SNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASE 368
              Q +  EIEQ A+AVNE+++  + V+ NA+S    A+++   A  G     E+  A +
Sbjct: 289 RTLQQQNSEIEQAATAVNEMSAAVEEVARNATSTSQAAQQSSLSADLGNQRVNETLTAMQ 348

Query: 369 QMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAV 428
            +   +  ++  V  L  Q++ IS V+ VIRG+++QTNLLALNAAIEAARAGE GRGFAV
Sbjct: 349 NLTGLVEGSSAQVTALAGQAQDISKVLGVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV 408

Query: 429 VADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIG 488
           VADEVR LA RTQ ST+E++ +I  +Q  S+   +SM  S   +   +     A ++L  
Sbjct: 409 VADEVRALAHRTQTSTQEVEQMISAIQAGSSATVESMHKSTQEVHVTRKTAEDAGESLRQ 468

Query: 489 ITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHL 548
           IT+SV +IN+ N Q+A A+EQQ+HV +D++R++ ++  L  Q+  G  Q+  AS ELS L
Sbjct: 469 ITDSVLEINNRNLQIAAASEQQAHVARDVDRSLVSIRDLAVQSSEGTRQTLIASTELSQL 528

Query: 549 A 549
           A
Sbjct: 529 A 529