Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., methyl-accepting chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  220 bits (561), Expect = 1e-61
 Identities = 136/377 (36%), Positives = 228/377 (60%), Gaps = 4/377 (1%)

Query: 185 DLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSV 244
           +L Q V   AT +   SAQS+  V     I VL ++++  LA+ ++    VA ++  +++
Sbjct: 280 ELGQNVVGLATDA-RSSAQSSLYVA--VAIVVLMLIVVLWLASVIIRNIKVAVVDVNRTL 336

Query: 245 MRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVM 304
           M  L+  DL+ +    G++E  ++S++++    Q+   + ++   + +VA+A+ + +AV 
Sbjct: 337 MA-LSTRDLTARTRYIGKDEFGEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSAVA 395

Query: 305 TQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESS 364
            Q   N   +    +QVA+A++E+++T  +V+ + + A   ++  +     G      + 
Sbjct: 396 LQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEMSQRVNSSTVQGKTEIDNTI 455

Query: 365 QASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGR 424
              +++++   + +R++  LK +S  IS+V++VIRGV+DQTNLLALNAAIEAARAGE GR
Sbjct: 456 GLIQELSVQAEETSRIIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGR 515

Query: 425 GFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKAND 484
           GFAVVADEVR LA +TQ ST  IQ +I  LQ+ S  A  SMQ +L    +  +   +A +
Sbjct: 516 GFAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGE 575

Query: 485 ALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNE 544
            L  I E ++ I+D N QVA+AAE+QS V ++I+RNV ++++LV Q   G  Q+A  S E
Sbjct: 576 LLEEIAEGIATISDRNIQVASAAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQTAVTSRE 635

Query: 545 LSHLAEKQKAQLSFFKL 561
           L+ LAE+Q+  +  FK+
Sbjct: 636 LARLAEQQQGLVGRFKV 652



 Score = 25.4 bits (54), Expect = 0.007
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 382 LRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQ 441
           L + ++SE + ++   +   +    L  +   I+  R G SG     +    + +  + +
Sbjct: 28  LFVADKSENLGDMRRAVTATAVAQKLSNVVTTIQRER-GASG---VFLGSGGKSMQDKLK 83

Query: 442 ASTKEIQAIIEELQTQST---MANDSMQTSLDMLTQNKALTAKANDALIGITESVSDIND 498
           A  +E    I E++TQST    + D +  +LD LT   AL  K +   I  TES +   D
Sbjct: 84  AFRQETDKAISEMRTQSTDGIPSPDKVYRALDDLT---ALRLKIDTLGINNTESSTRFTD 140