Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  215 bits (547), Expect = 4e-60
 Identities = 135/357 (37%), Positives = 205/357 (57%), Gaps = 10/357 (2%)

Query: 211 NAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQG--DLSVKADADGENEIAKL 268
           NA + +  ++++ VL    +   IV P+ +    M  +A G  DL+   +  G +EI +L
Sbjct: 191 NAGMFIAGIVLIMVLLLVTIVRSIVRPLRAAVGAMASIASGESDLTRTLETHGNDEITEL 250

Query: 269 SQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNEL 328
               N  V +L   V QL   +  +  AST+L +   QA+S ++ +  +++ VA+AVNE+
Sbjct: 251 GTHFNAFVAKLRNVVGQLQHSAVALGQASTDLGSDAEQAQSRSEQQSQQMDLVATAVNEV 310

Query: 329 ASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKEQS 388
                +V+ NA  A +  R+A+  A+ G      S +  E ++  +  A +V+  L  +S
Sbjct: 311 TYGVQDVAKNAEHAASEMRDAESQAQQGQINIDNSLRQIEHLSSTIGQAVQVMQSLASES 370

Query: 389 EQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQ 448
            QI +V+EVI  +++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ ST EIQ
Sbjct: 371 TQIGSVLEVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTQKSTAEIQ 430

Query: 449 AIIEELQTQSTMA----NDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQVA 504
           ++IE LQ  S  A     DS ++S   LT  +A   +A  +L  I++++ ++N  NA +A
Sbjct: 431 SMIERLQKHSDAAVKVIGDSSRSS--QLTIEQA--NQAGQSLTSISQALRNLNSLNASIA 486

Query: 505 TAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLSFFKL 561
           +A  QQ+HV  DIN+NV+  + L         QS SAS  L  L+E+    L  F++
Sbjct: 487 SATLQQTHVVDDINQNVTQAAQLSQSTALAAEQSTSASLHLRGLSEELNTLLKQFRV 543