Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  225 bits (574), Expect = 3e-63
 Identities = 145/475 (30%), Positives = 250/475 (52%), Gaps = 17/475 (3%)

Query: 87  RISAVYAIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAESQ 146
           ++   +  Y A    +    +R+ + +V +++ +++  +    DV  +   +  Y  + +
Sbjct: 169 KMRTAFRSYTASPSKSGEDTVRQAIAQVVASIDTLKDTSLPRADVQALAAGMATYSGQLE 228

Query: 147 KMVALFNRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNA 206
            +VA   ++D+            Q    T    I  I D    + +    S  + AQ   
Sbjct: 229 TLVAAQAKVDEA-----------QGGITTSIATILGITDKMTAIQNEFRASDAEKAQEKI 277

Query: 207 VVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADGENEIA 266
           ++        LS L L VLAAWL++  IV P+     ++  +A+GD + K      +E+ 
Sbjct: 278 LLWLG-----LSAL-LGVLAAWLITRSIVHPLKETVEIVEVVAEGDFTYKTQVTRNDELG 331

Query: 267 KLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVN 326
            L   +    + L + + ++     +VASA+ +L+AV  Q  +    + +E EQ+A+A+ 
Sbjct: 332 ALQGSMLRMTSGLRSLIGEMKDGIVQVASAAEQLSAVTEQTSAGVNAQKLETEQIATAMQ 391

Query: 327 ELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKE 386
           ++ +T   VS NA+ A  TA+ A +LA+ G  +   +    E +A  +N     +  L+ 
Sbjct: 392 QMTATTHEVSRNAAQAVNTAQIASQLAQKGGQVVDRTRSQIETLAREMNMTRTAMAALRG 451

Query: 387 QSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKE 446
            ++ I  V++VI+ V+DQTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RT+ ST E
Sbjct: 452 NTQSIGGVLDVIKTVADQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAVRTRTSTDE 511

Query: 447 IQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQVATA 506
           I  +I ELQT +      ++ +L +   +  L+ +A++ L  IT SV +I   N Q+A A
Sbjct: 512 IALLINELQTSTDHMGQVLEQNLALTDSSVELSTQASEVLQSITASVHEIEVMNEQIAVA 571

Query: 507 AEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLSFFKL 561
            EQQS+V ++I R V+N+  +  Q      ++A++S EL+ ++ + +   + FK+
Sbjct: 572 TEQQSNVGEEIGRGVTNVRDISDQTAAASEETATSSVELARVSARLQEMTNRFKV 626