Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  224 bits (572), Expect = 5e-63
 Identities = 159/528 (30%), Positives = 276/528 (52%), Gaps = 19/528 (3%)

Query: 34  LLPVLFTMIALVIALWITKVNLTHEQQAIADN--------THALVRYKDTIAQIDDTIYP 85
           L+   F +IA  I L +  +       A  D         T A+      + ++D     
Sbjct: 18  LMASTFAIIAAFIVLSVFMIQTLKTSTANVDALYNRDFLATEAVNNIDGALTRVD----- 72

Query: 86  LRISAVYAIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAES 145
           + I  + AI + E+   +  E     +++      + ++   + DV + +Q    YV   
Sbjct: 73  INILRMIAIGNPEQTAGWKNENEAAFSKLDELTVQLSKNTAETLDVTLTQQLQRGYVKLR 132

Query: 146 QKMVALFNRLDQG-LATREEAN-VFIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQ 203
             M    + +  G +A     N   ++ F E   + +  + +  ++       + E SA 
Sbjct: 133 DGMRHQTSVIQTGDIAAATNINRTEVKPFAEQVFKTLQTLREQGKQRAGERFDAQESSAT 192

Query: 204 --SNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADG 261
             +N  +     I +L V++  +    +LS  I    +++ ++ R +A+GDLS   +   
Sbjct: 193 QANNLSIAATLTIAILGVIVTLMTIRSILSA-IGGEPSTVATITRTIARGDLSSTINISA 251

Query: 262 ENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQV 321
            N+ + ++  V    TQL  T++Q++  + ++A+A+ E+ A+        Q +  EI+Q 
Sbjct: 252 -NDTSSVAAAVVAMQTQLRDTLQQISSSATQLAAAAEEMTAITEDGVQGIQRQNNEIDQA 310

Query: 322 ASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVV 381
           A+AVNE+ S  + V+ NA     ++  A   A+ GL + K++  +   M+  +   A ++
Sbjct: 311 ATAVNEMTSAVEEVARNAEHTARSSSNATSAAQDGLGLVKKTVTSINTMSTDVQKTATLI 370

Query: 382 LRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQ 441
             L  QS  I  V++VIRG+++QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RTQ
Sbjct: 371 GELAGQSRDIGKVLDVIRGLAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQ 430

Query: 442 ASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNA 501
            ST EI+ ++  +Q  +  A  SM+ + ++ ++   +   AN++L  I+ +VS+IND N 
Sbjct: 431 QSTSEIERLVTNIQNGTERAVGSMRGNTELASETLGIAEGANESLTVISAAVSEINDLNL 490

Query: 502 QVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLA 549
            +A+AA+QQ+HV ++++RN+ N+  L  Q+ +G  Q+ASAS ELS LA
Sbjct: 491 VIASAAQQQAHVAREVDRNLMNIRDLSAQSSSGAQQTASASRELSTLA 538



 Score = 38.1 bits (87), Expect = 9e-07
 Identities = 21/93 (22%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 459 TMANDSMQTSLDMLTQNKALTAKANDAL-IGITESVSDINDSNAQVATAAEQQSHVTQDI 517
           T+A   + +++++   + +  A A  A+   + +++  I+ S  Q+A AAE+ + +T+D 
Sbjct: 237 TIARGDLSSTINISANDTSSVAAAVVAMQTQLRDTLQQISSSATQLAAAAEEMTAITEDG 296

Query: 518 NRNVSNMSTLVHQNVTGISQSASASNELSHLAE 550
            + +   +  + Q  T +++  SA  E++  AE
Sbjct: 297 VQGIQRQNNEIDQAATAVNEMTSAVEEVARNAE 329