Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  219 bits (559), Expect = 2e-61
 Identities = 129/372 (34%), Positives = 212/372 (56%)

Query: 178 RMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAP 237
           +++  +  +    N  A  +   S Q+     RN  I +      + +    +S  I  P
Sbjct: 163 KVMDQLTTIVNSNNRQAGEAAVASDQTQNSAQRNLYIGIGLSFFAAFVMGLFISRAISTP 222

Query: 238 INSLQSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASAS 297
           IN+  +  R++A GDL++   +   +E   +   ++     L +T+ Q++  ++++ASA+
Sbjct: 223 INTAVTNARRIASGDLTLPIASQYHDEAGMMLVALSDMQDNLKSTIGQISSAADQLASAA 282

Query: 298 TELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGL 357
            EL AV  ++      +  EI+Q ASAVNE+ +  + V+ NA S    +R+    A +G 
Sbjct: 283 EELNAVTEESSRGLIRQNDEIQQAASAVNEMTAAVEEVARNAMSTSEASRQTSTDAAAGR 342

Query: 358 AIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAA 417
              +++  A   ++  ++ +  +V  L  +  +I  V++VIRG+++QTNLLALNAAIEAA
Sbjct: 343 DQARDAVNAINTVSAEISSSTTMVEELAGRVREIGQVLDVIRGIAEQTNLLALNAAIEAA 402

Query: 418 RAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKA 477
           RAGE GRGFAVVADEVR LAARTQAST EI+ +I  +Q  +  A  +M  S  + +  + 
Sbjct: 403 RAGEQGRGFAVVADEVRALAARTQASTGEIETMIGSVQASADQAVRAMANSRTLTSNTQT 462

Query: 478 LTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQ 537
           L      +L  I +SV++IND N  +ATA+E+QSHV ++++RN+ N+  L  Q   G  Q
Sbjct: 463 LAQATGQSLERIAQSVAEINDRNMLIATASEEQSHVAREVDRNLVNIQDLSAQTAAGAHQ 522

Query: 538 SASASNELSHLA 549
           ++++S ELS LA
Sbjct: 523 TSASSQELSRLA 534



 Score = 40.0 bits (92), Expect = 2e-07
 Identities = 54/293 (18%), Positives = 124/293 (42%), Gaps = 6/293 (2%)

Query: 261 GENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQ 320
           G   I+ LS  ++   T    +V +   ++  V + + +L  ++     NA   + +   
Sbjct: 31  GSRGISALSSSLDNVFTNSLLSVTKSGEVTASVIAQNRDLYRLLAAMAGNAPQSVKDDIL 90

Query: 321 VASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDA-AR 379
            + + N+  +     +  A+  D   R A +        ++   + ++ +AL+ + A AR
Sbjct: 91  ASMSANKTQAEKSYATYRATPLDDDERAAGDQMDRDWPGYQALIEQAKSVALSGDIAGAR 150

Query: 380 VVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAAR 439
            ++    +S  +  V++ +  + +  N  A  AA+ + +   S +    +   +   AA 
Sbjct: 151 AIIDGDVRSGYLK-VMDQLTTIVNSNNRQAGEAAVASDQTQNSAQRNLYIGIGLSFFAAF 209

Query: 440 TQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDS 499
                   +AI   + T  T A       L +   ++    +A   L+ +++   ++  +
Sbjct: 210 VMGLFIS-RAISTPINTAVTNARRIASGDLTLPIASQ-YHDEAGMMLVALSDMQDNLKST 267

Query: 500 NAQVATAAEQQSHVTQDINRNVSNMST-LVHQNVTGISQSASASNELSHLAEK 551
             Q+++AA+Q +   +++N      S  L+ QN   I Q+ASA NE++   E+
Sbjct: 268 IGQISSAADQLASAAEELNAVTEESSRGLIRQN-DEIQQAASAVNEMTAAVEE 319



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 18/119 (15%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 432 EVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITE 491
           ++   A +  ++ +E+ A+ EE        ND +Q +   + +  A       A+  +  
Sbjct: 270 QISSAADQLASAAEELNAVTEESSRGLIRQNDEIQQAASAVNEMTA-------AVEEVAR 322

Query: 492 SVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAE 550
           +    ++++ Q +T A       +D    ++ +S  +  + T + + A    E+  + +
Sbjct: 323 NAMSTSEASRQTSTDAAAGRDQARDAVNAINTVSAEISSSTTMVEELAGRVREIGQVLD 381