Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  244 bits (624), Expect = 6e-69
 Identities = 142/384 (36%), Positives = 224/384 (58%), Gaps = 7/384 (1%)

Query: 176 GNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIV 235
           G  M++  NDL  + N        +S Q        AM+       L +LAAW+++ QI 
Sbjct: 260 GVSMLATSNDLITRQNKSRDADSAKSVQMIIAATALAMV-------LGILAAWVITRQIT 312

Query: 236 APINSLQSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVAS 295
            P+     V+ ++A GDLS   + D ++E+ KL   +      L   V  +     ++AS
Sbjct: 313 TPLQETLEVVERVASGDLSRNLNVDRKDELGKLQATIQRMTVSLRELVGGIRDGVTQIAS 372

Query: 296 ASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKS 355
           A+ EL+AV  Q  +    + +E +QVA+A++E+ +T   V+ NA  A   A  AD  A+ 
Sbjct: 373 AAEELSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQEVARNAEEASEAAVAADRQARD 432

Query: 356 GLAIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIE 415
           G  +  E+    E++A A+ +++  +  LK++S++I +V++VI+ V++QTNLLALNAAIE
Sbjct: 433 GERVVNEAIAQIERLASAVGNSSEAMGALKQESDKIGSVLDVIKSVAEQTNLLALNAAIE 492

Query: 416 AARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQN 475
           AARAGE+GRGFAVVADEVR LA RTQ ST+EI+A+I  LQ+ +  A   M +S ++ T +
Sbjct: 493 AARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEALIARLQSGTQQATTVMDSSRELSTSS 552

Query: 476 KALTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGI 535
             LT +A  +L  IT++VS I   N Q+A AAE+QS   ++INR++ N+  +  Q     
Sbjct: 553 VELTRRAGGSLANITKTVSSIQAMNQQIAAAAEEQSATAEEINRSIINVRDVSEQTSAAS 612

Query: 536 SQSASASNELSHLAEKQKAQLSFF 559
            ++A++S EL+ L    +  +S F
Sbjct: 613 EETAASSVELARLGNHLQVLVSRF 636



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 69/333 (20%), Positives = 135/333 (40%), Gaps = 52/333 (15%)

Query: 266 AKLSQDVNTTVTQL---YTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVA 322
           A+ +  V +T+ +L     T   L R  E +     ++ A     +S   M    I+   
Sbjct: 76  AETAAKVRSTLDELDAALQTARNLLRSPENLQLLDVQIQATRDYRQSFEDMS-KAIDTRE 134

Query: 323 SAVNELASTADNVSDNASSADATAREADE-LAKSGLAIFKESSQASEQMALALNDAARVV 381
           ++ +++   AD   D A+  +A   + D  LA +G+    +  Q +         + R  
Sbjct: 135 ASRSQMGENADKAVDQANRIEAELLKEDNILAFNGIVGVSKLIQQARFQVRGYTYSGRPD 194

Query: 382 LRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQ 441
              K+ ++ I + +  I  ++   +    +  ++ A AG +G   AV   + R   A ++
Sbjct: 195 FE-KDANKAIDDAVTGINTLAGDISS-TYSPMLQQAIAGLNGYRAAV--GKYRDAQAASK 250

Query: 442 ASTKEIQAIIEELQTQSTMANDSMQTSLDMLT-QNK---ALTAKANDALIGITESVSDIN 497
           A+          L   +T+    + TS D++T QNK   A +AK+   +I  T     + 
Sbjct: 251 AA----------LDKMTTLGVSMLATSNDLITRQNKSRDADSAKSVQMIIAATALAMVLG 300

Query: 498 DSNA-----QVATAAEQQSHVTQ-----DINRNVS-------------------NMSTLV 528
              A     Q+ T  ++   V +     D++RN++                   ++  LV
Sbjct: 301 ILAAWVITRQITTPLQETLEVVERVASGDLSRNLNVDRKDELGKLQATIQRMTVSLRELV 360

Query: 529 HQNVTGISQSASASNELSHLAEKQKAQLSFFKL 561
                G++Q ASA+ ELS + E+  A ++  K+
Sbjct: 361 GGIRDGVTQIASAAEELSAVTEQTSAGVNSQKV 393