Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  220 bits (561), Expect = 1e-61
 Identities = 146/495 (29%), Positives = 266/495 (53%), Gaps = 22/495 (4%)

Query: 81  DTIYPLRISAVYAIYDAERRNNF---IAELREGLTEVQSALSSIEQDAQFSRDVPVVK-- 135
           DT     I+ VY +  AE R+ +     EL   L EV++ +  I +  +   D  +V   
Sbjct: 187 DTTMTGIITTVYDLVAAEERSKYELISKELDYMLGEVKTKMEYISRHGEGIIDADLVSTL 246

Query: 136 -----QSIEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKV 190
                + +++   +   +     ++D    T E+  +  ++      +M     D+    
Sbjct: 247 NDDSTKVLKMLEGKDTLVTLKSRQIDSTQLTSEKLTLVEKNALTVTEQMKRLAKDIETVT 306

Query: 191 NHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPI----NSLQSVMR 246
           N  +  ++          + +A +  L +++++++ A ++S  +V P+    + +   + 
Sbjct: 307 NDISNQALND--------INSASLRTLILVVIAIVVAVVISFAVVRPLKRSLDEVNGALN 358

Query: 247 KLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQ 306
            LA GDL+ K D  G +E A+LS++ N  V  L + +  +   S ++A+A+ E +A+ +Q
Sbjct: 359 VLASGDLTHKLDDTGHDEFAELSRNCNRLVDSLRSLIASILDRSNQLAAAAEETSAITSQ 418

Query: 307 AESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQA 366
                Q +  +++QVA+A  EL+S+A  V+ +A  A +  ++ADE  +    I  E+ + 
Sbjct: 419 TTIGIQEQKSQVDQVATATTELSSSAHQVNMSADDALSQIKQADEETQHMRTIADENKRT 478

Query: 367 SEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGF 426
              +A  +  A++V+ ++   S  I ++++VIRG+++QTNLLALNAAIEAARAGE GRGF
Sbjct: 479 ILSLADEVAKASKVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGF 538

Query: 427 AVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDAL 486
           AVVADEVR LA+RTQ ST+EIQ +IE LQ  +  A   MQ   +        T +AN AL
Sbjct: 539 AVVADEVRSLASRTQDSTREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTEQANQAL 598

Query: 487 IGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELS 546
             I+ SV    D+   +A AA++Q+ V+Q ++  + +++ +  +   G  Q+A +S+E++
Sbjct: 599 QTISHSVHKAYDAGTHIAQAAQEQNLVSQQVSEKLEHIAAISEETALGAEQTAKSSHEVA 658

Query: 547 HLAEKQKAQLSFFKL 561
            LAE+ ++ +  F++
Sbjct: 659 RLAEELQSSVKEFRV 673



 Score = 47.8 bits (112), Expect = 1e-09
 Identities = 60/300 (20%), Positives = 130/300 (43%), Gaps = 22/300 (7%)

Query: 262 ENEIAKLSQDVNTTVTQLYTTVEQLTRISE--EVASASTELAAVMTQAESNAQMELMEIE 319
           E EIA  +  ++TT+T + TTV  L    E  +    S EL  ++ + ++  +      E
Sbjct: 176 EREIAAAAGAIDTTMTGIITTVYDLVAAEERSKYELISKELDYMLGEVKTKMEYISRHGE 235

Query: 320 QVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAAR 379
            +  A  +L ST   ++D+++         D L          +   SE++ L   +A  
Sbjct: 236 GIIDA--DLVST---LNDDSTKVLKMLEGKDTLVTLKSRQIDSTQLTSEKLTLVEKNA-- 288

Query: 380 VVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAAR 439
             L + EQ ++++  IE +        L  +N+A        S R   +V   + +    
Sbjct: 289 --LTVTEQMKRLAKDIETVTNDISNQALNDINSA--------SLRTLILVVIAIVVAVVI 338

Query: 440 TQASTKEIQAIIEELQ-TQSTMANDSMQTSLDMLTQNK--ALTAKANDALIGITESVSDI 496
           + A  + ++  ++E+    + +A+  +   LD    ++   L+   N  +  +   ++ I
Sbjct: 339 SFAVVRPLKRSLDEVNGALNVLASGDLTHKLDDTGHDEFAELSRNCNRLVDSLRSLIASI 398

Query: 497 NDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQL 556
            D + Q+A AAE+ S +T      +    + V Q  T  ++ +S++++++  A+   +Q+
Sbjct: 399 LDRSNQLAAAAEETSAITSQTTIGIQEQKSQVDQVATATTELSSSAHQVNMSADDALSQI 458