Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  225 bits (574), Expect = 3e-63
 Identities = 142/436 (32%), Positives = 246/436 (56%), Gaps = 23/436 (5%)

Query: 143 AESQKMVALFNRLDQGLATREEANVFIQS-----FRETGNRMISAINDLSQKVNHYAT-- 195
           AE  ++V+L +++     T+E  N  IQ+     ++ +   ++  IN L + +   A   
Sbjct: 143 AEVNRLVSLLDKV-----TQEGFNPAIQALSQGEYKRSNQLLLEKINPLFKDITDQAQAF 197

Query: 196 ---------TSMEQSAQSNAV-VMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVM 245
                    TS + S ++ ++ +   A+ + +++L +SV + +++  ++   +  L+   
Sbjct: 198 LDMQIAEAKTSYQASQETVSLYIWLVAIFSGVAMLAISVSSVFIIR-RVSLSVVQLEETA 256

Query: 246 RKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMT 305
             +A GDL+ +    G +E A +++ VN   +     V      +  +ASA+ E A V T
Sbjct: 257 VDIAAGDLTKRIRLGGHDEFAHIAEHVNRIASDFQQAVTNTHASTSRLASAAEENAVVST 316

Query: 306 QAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQ 365
           Q + N   +  + + +A+A++E  +T   V+ +A+SA   +++A+  A     +  ES  
Sbjct: 317 QTQRNVLDQQQQTQLIATAIHEFTATVREVAQSAASAATASQDANGAAHGAQGVVDESIA 376

Query: 366 ASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRG 425
             E +A  L+ A+  +  L + S +I  V++VI+ +S+QTNLLALNAAIEAARAGE GRG
Sbjct: 377 VIEALAQELSRASEAMTLLAQHSNEIGTVVDVIQAISEQTNLLALNAAIEAARAGEQGRG 436

Query: 426 FAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDA 485
           FAVVADEVR LA RTQ ST+EIQ +I+ LQ  +  +   MQ+  + +  +   +    DA
Sbjct: 437 FAVVADEVRSLAKRTQDSTEEIQKMIQRLQQGARDSMQMMQSGTEQVKLSVDKSLMVRDA 496

Query: 486 LIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNEL 545
           L  I  S+ +IN  NAQ+ATA+E+QS VT++IN N++N+S +  Q   G  QS+ A+ +L
Sbjct: 497 LQQILNSIEEINALNAQIATASEEQSSVTEEININITNISEISDQTAEGARQSSDATEDL 556

Query: 546 SHLAEKQKAQLSFFKL 561
           + LAE  +A ++ +K+
Sbjct: 557 ARLAESMEADIAHYKV 572