Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  231 bits (590), Expect = 5e-65
 Identities = 157/495 (31%), Positives = 281/495 (56%), Gaps = 11/495 (2%)

Query: 75  TIAQIDDTIYPLRISAVYAIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVV 134
           T + ID++   L I++ Y + +A+ ++ +   L+E    +  A + +E  ++    V + 
Sbjct: 183 TASNIDNSFSNL-ITSSYDLVNAKEKSKYETILKELDYIISEAQNKLEYVSRHWEGV-ID 240

Query: 135 KQSIEIYVAESQKMVALFNRLDQGLATREEA---NVFIQSFRETGNRMISAINDLSQKVN 191
           +++++    E+ K+  + N  D  L  + +    N+       T     +A+N     +N
Sbjct: 241 QEALDNINTEASKVFTMLNGPDSILKRKGQQLDFNLQASQLLNTVESNATAVNQSMGSLN 300

Query: 192 HYATTSMEQSAQSNAV-VMRNAMITVLSVLMLSVLAAWLLSGQIVAPI-NSLQSV---MR 246
             A  S  Q+    A+  + +A    L++++++++ A L+S  ++ P+ NSL  V   + 
Sbjct: 301 K-AIESTSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLDKVNNALN 359

Query: 247 KLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQ 306
            LA G+L+ K D  G +E A+LS++ N  V  L T ++ +   S ++A+A+ E +A+  Q
Sbjct: 360 ILASGNLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAEETSAITAQ 419

Query: 307 AESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQA 366
             +  Q +  +++QVA+A  +L+S+A  VS +A  A    R+ADE A+   AI  E+ + 
Sbjct: 420 TTAGIQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRAIADENKRT 479

Query: 367 SEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGF 426
              +A  +  A +V+ ++   S  I ++++VIRG+++QTNLLALNAAIEAARAGE GRGF
Sbjct: 480 ILALADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGF 539

Query: 427 AVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDAL 486
           AVVADEVR LA+RTQ ST+EIQ +I+ LQ  +  A   M+            T +AN AL
Sbjct: 540 AVVADEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQANVAL 599

Query: 487 IGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELS 546
             I+ +V   +DS   +A AA++Q+ V+Q ++  + +++ +  +  TG  Q+A +S++++
Sbjct: 600 ESISNAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTAQSSHQVA 659

Query: 547 HLAEKQKAQLSFFKL 561
            LAE+ +A +  FK+
Sbjct: 660 QLAEELQASVGEFKV 674