Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  236 bits (602), Expect = 2e-66
 Identities = 171/549 (31%), Positives = 291/549 (53%), Gaps = 17/549 (3%)

Query: 25  KNLSIRLQVLLPVLFTMIALVIAL-WITKVNLTHEQQAIADNTHALVRYKDTIAQIDDTI 83
           KN+++  Q L+ V F +  LV+ + W + V L          T  L+    + AQ+   +
Sbjct: 3   KNMTLA-QRLISVFFILSLLVLGVAWFSVVQLAGLHSNTTKITENLIPSIRSSAQMHIAL 61

Query: 84  YPLRISAVYAIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQSIE---I 140
              R + +  + D    ++   E+ +     ++A S  E  AQ    +  V +  E   I
Sbjct: 62  LDARRNELNMVIDVMTHDSAAIEISK--QRFETAKSEFEAGAQQYAKLNFVSEQDEQLFI 119

Query: 141 YVAESQKMV-----ALFNRLDQGLATREEANVFIQSF-RETGNRMISAINDLSQKVNHYA 194
            + E+ +       +L + +DQG      AN+ I++  R+T         +L  + +  A
Sbjct: 120 KLGEAAEKYFSAHSSLVSAIDQG--DMASANIMIKTLTRQTLEVAGEETMNLRHENDRAA 177

Query: 195 TTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLS 254
              + QS  +       ++I   S +   V+ A+LL  QI  PI  L     +++ G+L+
Sbjct: 178 QEMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNLT 237

Query: 255 VKAD--ADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQ 312
            K +  A   +E  +L++  N     L+  V +++    +++SA+ E+++V   + +N +
Sbjct: 238 NKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNME 297

Query: 313 MELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMAL 372
            +  E+ Q+A+A++E+ +T  +V+ N + A   A +A + A  G     +S    +++A 
Sbjct: 298 TQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAG 357

Query: 373 ALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADE 432
           A+   A V+ +L + S  I  V+EVI+G+++QTNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 358 AIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 417

Query: 433 VRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITES 492
           VR LA RTQ ST  I +II ELQ ++  A ++MQ S +M+ +      +A +++  I+ S
Sbjct: 418 VRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSS 477

Query: 493 VSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQ 552
           VS I+  N Q+ATA E+Q  V++++NRNV+N+S       TG  Q A A N+LSHLA + 
Sbjct: 478 VSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQL 537

Query: 553 KAQLSFFKL 561
           +  +  F +
Sbjct: 538 QDMVKKFHI 546