Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  273 bits (697), Expect = 2e-77
 Identities = 164/446 (36%), Positives = 277/446 (62%), Gaps = 8/446 (1%)

Query: 115 QSALSSIEQDAQFSRDVPVVKQSIEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRE 174
           Q  +SS E+   F+    + K+    Y++  QK++ L        A +      ++++ E
Sbjct: 101 QQLVSSNEEQLIFNNFNKLYKE----YLSTQQKILILSRENKNEDAKQLLLTESLKTYNE 156

Query: 175 TGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQI 234
             + ++  ++D++ K    A ++        ++ M  A++ ++S+L+L+   + ++S  I
Sbjct: 157 YSDLLLQ-LSDINTK-GAQAASNYGDEIYDESIKMTIAILVIVSLLVLTT--SIVISKFI 212

Query: 235 VAPINSLQSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVA 294
           +  I ++Q  + KLA GDL+ +    G NE+  L+QD N T  ++    EQL  ++   A
Sbjct: 213 ITSIKTVQHFIAKLANGDLTDRITDIGNNELGFLAQDCNHTADKISEMTEQLITVANNTA 272

Query: 295 SASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAK 354
           +++  LA+ M Q E+N++  L+++EQ+A+A+NE++STA  VS NA+ A+ +A EA E   
Sbjct: 273 TSAEVLASTMNQVENNSKQMLVQVEQIATALNEMSSTALEVSRNATEAETSASEAMENVT 332

Query: 355 SGLAIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAI 414
            G     ES+  S ++  A+ D+  +V +LK+ S +I +VI+VI  +S+QTNLLALNAAI
Sbjct: 333 EGNKSLGESNNISVKIGTAIRDSGTIVNQLKDFSIEIGSVIDVITSISEQTNLLALNAAI 392

Query: 415 EAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQ 474
           EAARAGE+GRGFAVVADEVR LAA+TQ ST +IQ II +LQ+Q+  A+  M+ +  +L +
Sbjct: 393 EAARAGEAGRGFAVVADEVRSLAAKTQQSTVDIQGIISKLQSQAEKADHYMKANASLLDE 452

Query: 475 NKALTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTG 534
           ++ ++ K  +A  GI+ SV+ I++ N  VATA+ +QS VT+DI++N+S+   +V QNV G
Sbjct: 453 SQIISEKVRNAFDGISASVNAISNVNTVVATASSEQSSVTEDISKNISSTVEMVDQNVMG 512

Query: 535 ISQSASASNELSHLAEKQKAQLSFFK 560
           +  ++ A +++   A KQK  L+FFK
Sbjct: 513 VGNASKACHDVLTEAGKQKQLLAFFK 538