Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  205 bits (521), Expect = 5e-57
 Identities = 122/313 (38%), Positives = 197/313 (62%), Gaps = 3/313 (0%)

Query: 251 GDLSVKAD-ADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAES 309
           GDL+V+   A+  +EI  L+   N  V +L+  + ++  I+ ++   +   +A       
Sbjct: 319 GDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSASAADNSQ 378

Query: 310 NAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQ 369
             +++  E+  VA+AV E+AS  + ++ NA     TA+ A  L+  G     +S Q+   
Sbjct: 379 RIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRN 438

Query: 370 MALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVV 429
           +A  ++ A R++  L E S++I++++  I G+++QTNLLALNAAIEAARAGE GRGFAVV
Sbjct: 439 LANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVV 498

Query: 430 ADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGI 489
           ADEVR+L+ RT +ST+EIQA+IE LQ  +  A  SM  S DM   + A    A+++L+ I
Sbjct: 499 ADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQI 558

Query: 490 TESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASA-SNELSHL 548
           ++++++I+D  +Q+ATAAE+Q+ VT +INRN  ++   V +N++  +QSA   S EL+HL
Sbjct: 559 SKAINEISDMASQIATAAEEQTSVTSEINRNTESIRE-VSENLSIEAQSAMVQSQELAHL 617

Query: 549 AEKQKAQLSFFKL 561
           A   + ++S FKL
Sbjct: 618 AASLQQEVSRFKL 630



 Score = 41.6 bits (96), Expect = 9e-08
 Identities = 54/263 (20%), Positives = 113/263 (42%), Gaps = 28/263 (10%)

Query: 98  ERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAESQKMVALFNRLDQ 157
           E + + +  +   +TE+ SA   I  +A+ +                +Q  V+L N   +
Sbjct: 381 EVQQDEVTMVATAVTEMASATEEIASNAEHTAQT-------------AQNAVSLSNHGQK 427

Query: 158 GLATREEANVFIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVL 217
            +   +++   + +  +T  R+IS +N+ SQK+N    T    + Q+N + +  A+    
Sbjct: 428 QVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAAR 487

Query: 218 SVLM---LSVLA--AWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADGENEIAKLSQDV 272
           +       +V+A    +LS +  +    +Q+++  L Q            +++A+     
Sbjct: 488 AGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAE----- 542

Query: 273 NTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELASTA 332
            T+V    +  E L +IS+ +   S   + + T AE    +   EI +   ++ E+   +
Sbjct: 543 -TSVADANSASESLLQISKAINEISDMASQIATAAEEQTSV-TSEINRNTESIREV---S 597

Query: 333 DNVSDNASSADATAREADELAKS 355
           +N+S  A SA   ++E   LA S
Sbjct: 598 ENLSIEAQSAMVQSQELAHLAAS 620



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 42/204 (20%), Positives = 88/204 (43%), Gaps = 29/204 (14%)

Query: 357 LAIFKESSQASEQMALALNDAAR------VVLRLKEQSEQI-------SNVIEVIRG-VS 402
           +AIFK   +  E++ALALND A       V +      ++I       +  +E + G +S
Sbjct: 294 VAIFKMQFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMIS 353

Query: 403 DQTNL---LALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQST 459
              N+   L   A   +A A ++ +   V  DEV M+A     +  E+ +  EE+ + + 
Sbjct: 354 RMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVA----TAVTEMASATEEIASNAE 409

Query: 460 MANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINR 519
               + Q ++ +    +    ++  ++  +   V    D+  ++ +   + S   Q IN 
Sbjct: 410 HTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEV----DTAGRIISELNEHS---QKINS 462

Query: 520 NVSNMSTLVHQ-NVTGISQSASAS 542
            +  +S +  Q N+  ++ +  A+
Sbjct: 463 ILLTISGIAEQTNLLALNAAIEAA 486