Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  217 bits (553), Expect = 8e-61
 Identities = 158/538 (29%), Positives = 279/538 (51%), Gaps = 34/538 (6%)

Query: 35  LPVLFTMIALVI---ALWITKVNLTHEQQAIADNTHALVRYKDTIAQIDDTIYPLRISAV 91
           LP +F  I L+I   + +     L +    + +NT    +  +T   + +  + LR++ +
Sbjct: 13  LPSVFASILLIIIGISSYRGFAELNNTSSRLVNNT----KLAETFTNVREAFFELRLATL 68

Query: 92  YAIYDA---ERRNNFIAELREGLTEVQSALSSIEQDAQFSRDV-PVVKQSIEIYVAESQK 147
               DA   ++RN  + +L E L E  +      QDA+  R + P ++Q + +Y      
Sbjct: 69  VHNSDAISLQQRN--VRQLVEQLAEFNTDFMG--QDARTIRTLLPQIEQYVRLY------ 118

Query: 148 MVALFNRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNAV 207
                    Q LA  ++     +   E G       N+++Q V      + E   Q+   
Sbjct: 119 --------QQELAFAKQTGTEPELTSERGALGPKVSNEINQLVKLITQRNHELGKQAEDK 170

Query: 208 VMRNAMIT---VLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADGENE 264
           V     +    +L  ++ S+L+A  +S ++V  ++ ++ V+  LA GDL+ K    G+NE
Sbjct: 171 VNATEALLLGLILVAIVASLLSALFMSRRLVNIVHQIKRVVEHLADGDLTQKTQISGQNE 230

Query: 265 IAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNA-QMELMEIEQVAS 323
           +  L  D++  +  L   +  + + SE ++    +L  V + A ++A Q   +E +QV +
Sbjct: 231 LCALGADLDRVIDHLRHMISDIAQASEHMSDQIGQLN-VQSNANTHALQTHAVETDQVVT 289

Query: 324 AVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLR 383
           A+ E+++TA NV+ +A+SA    ++A+E A       ++++     +   ++ AA  +  
Sbjct: 290 AMTEMSATAHNVAGDAASAARFTQQANEQADKSKKAVEQAANTVVALVGKVDTAAHTIAE 349

Query: 384 LKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQAS 443
           + E +  I+ +++VI  ++DQTNLLALNAAIEAARAGE GRGFAVVADEVR LAARTQAS
Sbjct: 350 MNENTRHIATILDVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQAS 409

Query: 444 TKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQV 503
           T EI  ++E L+T +  A ++M  +          T    ++L  +T  V DIN  + Q+
Sbjct: 410 TAEINQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVTESLETLTTYVFDINGLSNQI 469

Query: 504 ATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLSFFKL 561
           ATAAE+QS V+++INRN++ +  +V +       + +++  L+   E+    +S F+L
Sbjct: 470 ATAAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSATSLAATKEQLTGVVSHFRL 527