Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  230 bits (587), Expect = 1e-64
 Identities = 140/384 (36%), Positives = 224/384 (58%), Gaps = 6/384 (1%)

Query: 183 INDLSQKVNHYATTSMEQSAQSNA---VVMRNAMITVLSVLMLSVLAAWLLSGQIVAPIN 239
           I D S K       ++++S    A   + ++  MI V++ L++    AW ++  I  PI 
Sbjct: 252 IKDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIA-LLIGTAIAWFIAKSITRPIA 310

Query: 240 SLQSVMRKLAQG--DLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASAS 297
                +  +A+G  DL+ + +   ++E+A+L+Q  N    +++ TV Q++  +  +A+++
Sbjct: 311 ETTDALNDIAEGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSA 370

Query: 298 TELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGL 357
            E++A+  + +  A  + +E EQVA+A+NE+A+T   V+ NA+ A   A  A E  + G 
Sbjct: 371 EEMSAITHETQQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGK 430

Query: 358 AIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAA 417
            + ++       +A  +  AA  +  L+  + QI +V+ VIR ++DQTNLLALNAAIEAA
Sbjct: 431 LLVEKVISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNLLALNAAIEAA 490

Query: 418 RAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKA 477
           RAGE GRGFAVVADEVR LA+RTQAST EIQ +IE LQ  +     SM TS        +
Sbjct: 491 RAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVS 550

Query: 478 LTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQ 537
           L  +A  AL  IT++VS I+  N Q+A+AA +Q  V+ +IN+NV+N++ +         Q
Sbjct: 551 LVHEAGSALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQ 610

Query: 538 SASASNELSHLAEKQKAQLSFFKL 561
           +A A +EL+ L+ +    LS FK+
Sbjct: 611 TARAGDELAQLSMRLTTLLSQFKI 634