Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  270 bits (691), Expect = 8e-77
 Identities = 179/543 (32%), Positives = 312/543 (57%), Gaps = 11/543 (2%)

Query: 24  LKNLSIRLQVLLPVLFTMIALV--IALWITKVNLTHEQQAIADNTHA-LVRYKDTIAQID 80
           ++NL I   +L      +IA++    + ++K+ + ++Q  +  N     VR  + +    
Sbjct: 1   MRNLKISHLLLGAFAIPIIAILGLTMMAMSKMQVINDQSTVISNDWLPAVRVIERLNGQT 60

Query: 81  DTIYPLRISAVYAIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVV---KQS 137
             +  L    + ++ + + R+    EL +   ++  ++ + EQ    +++  +    K+ 
Sbjct: 61  ADLRVLESRHILSLDEGQMRDTE-RELEKTKAQIDDSIRTYEQLISGNKERNIFNDFKRL 119

Query: 138 IEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKVNHYATTS 197
            + Y+   QK++ L        A +      ++++ E  + ++  ++DL+ K    A++ 
Sbjct: 120 YKEYLVVHQKLLILSRANKNEDAKQLLLTESLEAYNEYSDLLLK-LSDLNYKGAQDASSY 178

Query: 198 MEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVKA 257
            +     +  +M   +  ++ V +L ++ +  +S  I+  I ++QS M KLA GDLS + 
Sbjct: 179 GDVIYDESIKIM---LFILVIVSLLVLVTSTAISKFIITSIKTVQSFMAKLANGDLSDRI 235

Query: 258 DADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELME 317
              G NE+  L+Q  N T  ++    EQL  +++  A+++  LA+ M Q E N+Q  L++
Sbjct: 236 ADIGNNELGVLAQGCNETADKISEMTEQLITVADNTATSAEILASTMNQVEHNSQQMLVQ 295

Query: 318 IEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDA 377
           +EQ+A+A+NE++STA  VS NA+ A+ +A EA      G     ES   S ++  A+ D+
Sbjct: 296 VEQIATALNEMSSTALEVSKNATEAETSAAEAMGNVSEGNKSLGESDNISVKIGAAIRDS 355

Query: 378 ARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLA 437
             +V +LK+ S +I +VI+VI  +S+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA
Sbjct: 356 GAIVNQLKDYSIEIGSVIDVITSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLA 415

Query: 438 ARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDIN 497
           A+TQ ST +IQ II +LQ+Q+  A+  M+ +  +L +++ ++ K   A  GI+ SV+ I+
Sbjct: 416 AKTQQSTIDIQEIISKLQSQAEKADHYMKANTSLLDESQMVSEKVRSAFQGISASVNAIS 475

Query: 498 DSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLS 557
           + N  VATA+ +QS VT+DI+RN+S+   +V QNV GI  ++ A +++   A KQK  L+
Sbjct: 476 NVNTVVATASSEQSSVTEDISRNISSTVEMVDQNVVGIGNASKACHDVLSEAGKQKQLLA 535

Query: 558 FFK 560
           FFK
Sbjct: 536 FFK 538