Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  202 bits (514), Expect = 3e-56
 Identities = 120/313 (38%), Positives = 197/313 (62%), Gaps = 3/313 (0%)

Query: 251 GDLSVKAD-ADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAES 309
           GDL+V+   A+  +EI  L+   N  V +L+  + ++ +I+ ++   +   +A  T    
Sbjct: 319 GDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASATDNSQ 378

Query: 310 NAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQ 369
              ++  E+  VA+AV E+AS  + ++ NA     TA++A  L+  G     +S Q+   
Sbjct: 379 RIAVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQSIRN 438

Query: 370 MALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVV 429
           +A  +  A R++  L E S++I++++  I G+++QTNLLALNAAIEAARAGE GRGFAVV
Sbjct: 439 LANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVV 498

Query: 430 ADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGI 489
           ADEVR+L+ RT +ST+EIQA+IE LQ  +  A  SM  S DM   + A    A+++L+ I
Sbjct: 499 ADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQI 558

Query: 490 TESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASA-SNELSHL 548
           ++++++I+D  +Q+ATAAE+Q+ VT +INRN  ++   V +N++  +QS+   + EL+HL
Sbjct: 559 SKAINEISDMASQIATAAEEQTSVTSEINRNTESIRE-VSENLSIEAQSSMVQAQELAHL 617

Query: 549 AEKQKAQLSFFKL 561
           A   + ++  FKL
Sbjct: 618 AASLQQEVGRFKL 630



 Score = 41.6 bits (96), Expect = 9e-08
 Identities = 54/250 (21%), Positives = 107/250 (42%), Gaps = 28/250 (11%)

Query: 111 LTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAESQKMVALFNRLDQGLATREEANVFIQ 170
           +TE+ SA   I  +A+ +                +Q  V L N   + +   +++   + 
Sbjct: 394 VTEMASATEEIASNAEHTAQT-------------AQDAVGLSNHGQKQVMQSQQSIRNLA 440

Query: 171 SFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLM---LSVLA- 226
           +  ET  R+IS +N+ SQK+N    T    + Q+N + +  A+    +       +V+A 
Sbjct: 441 NEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 500

Query: 227 -AWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQ 285
              +LS +  +    +Q+++  L Q            +++A+      T+V    +  E 
Sbjct: 501 EVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAE------TSVADANSASES 554

Query: 286 LTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADAT 345
           L +IS+ +   S   + + T AE    +   EI +   ++ E+   ++N+S  A S+   
Sbjct: 555 LLQISKAINEISDMASQIATAAEEQTSV-TSEINRNTESIREV---SENLSIEAQSSMVQ 610

Query: 346 AREADELAKS 355
           A+E   LA S
Sbjct: 611 AQELAHLAAS 620



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 36/186 (19%), Positives = 80/186 (43%), Gaps = 28/186 (15%)

Query: 357 LAIFKESSQASEQMALALNDAAR------VVLRLKEQSEQI-------SNVIEVIRGVSD 403
           +AIFK   +  E++ALALND A       V +      ++I       +  +E + G+  
Sbjct: 294 VAIFKIQFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMIS 353

Query: 404 QTNLLA----LNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQST 459
           + + +A      A   +A A ++ +  AV  DEV M+A     +  E+ +  EE+ + + 
Sbjct: 354 RMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVA----TAVTEMASATEEIASNAE 409

Query: 460 MANDSMQTSLDMLTQNKALTAKANDALIGITESV-------SDINDSNAQVATAAEQQSH 512
               + Q ++ +    +    ++  ++  +   V       S++N+ + ++ +     S 
Sbjct: 410 HTAQTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISG 469

Query: 513 VTQDIN 518
           + +  N
Sbjct: 470 IAEQTN 475