Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 886 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  104 bits (259), Expect = 1e-26
 Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 13/182 (7%)

Query: 190 QEGIEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSYGHD 249
           +E I  LA+ DPLTGL NR        + +     S  + AL+F+D+DNFK IND +GH 
Sbjct: 440 EERIHNLAFYDPLTGLPNRRLLLDRLQQAMAAGCRSGQLGALMFIDLDNFKNINDLHGHQ 499

Query: 250 VGDQVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDL-----DNI 304
            GDQVL+  A RL+  IR  D        ++AR  GDEFV++L  + +  +L     ++I
Sbjct: 500 TGDQVLRIAAERLQGEIRASD--------TVARLGGDEFVVMLENLGDAPELAATQAEHI 551

Query: 305 LNRICNLFVDRYPETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKNQYR 364
             ++       Y   D+    + SIG  ++  D  +  EL + AD +MY AK  GKN  R
Sbjct: 552 GMKLLGSLGKPYRLNDLGLYSSASIGVVLFGTDGSSSDELMKRADMSMYEAKVAGKNALR 611

Query: 365 YY 366
           ++
Sbjct: 612 FF 613