Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 852 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  115 bits (289), Expect = 4e-30
 Identities = 67/180 (37%), Positives = 97/180 (53%), Gaps = 9/180 (5%)

Query: 187 TLYQEGIEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSY 246
           T  Q  ++ L+  DPLTGL NR     +  + L   +S +T+T L+++D+D FK +ND+ 
Sbjct: 421 TKAQARVQYLSQHDPLTGLPNRSRLRDYLEQNLASLRSGSTMT-LLYIDLDRFKPVNDTL 479

Query: 247 GHDVGDQVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILN 306
           GH  GD+VL   A RLR   R+ D         +AR  GDEFV+ L+ +    D+D + N
Sbjct: 480 GHAAGDEVLMGVASRLRERTRDGDL--------VARLGGDEFVVALHRMSEDEDIDRLCN 531

Query: 307 RICNLFVDRYPETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKNQYRYY 366
           RI       +   +   ++  SIG A+ P DA    EL RCAD A+Y AK  G+  +R Y
Sbjct: 532 RIIEALSSPFAYENHQISIGASIGVALAPMDATQANELLRCADIALYQAKDAGRGTWRAY 591