Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1099 a.a., diguanylate cyclase (GGDEF domain) with PAS/PAC and GAF sensors from Synechococcus elongatus PCC 7942

 Score =  105 bits (262), Expect = 6e-27
 Identities = 64/178 (35%), Positives = 91/178 (51%), Gaps = 18/178 (10%)

Query: 187  TLYQEGIEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSY 246
            TL QE +      DPLTGL NR   + +  ++L   + S     ++ LDID FKR ND +
Sbjct: 904  TLRQENLR-----DPLTGLFNRRYLQEFFEQELARAKRSGDSIGILMLDIDYFKRFNDEF 958

Query: 247  GHDVGDQVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVR---NLRDLDN 303
            GHD GD VLK  A  L N +R  D         + RF G+E  +L+ G     + R  D 
Sbjct: 959  GHDAGDMVLKQVARALLNQVRASD--------VVCRFGGEEIAILMPGASLEVSARKADQ 1010

Query: 304  ILNRICNLFVDRYPETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKN 361
            I   I  L +  + +T  L +LT+SIG A +P+  +    L + AD ++Y AK  G+N
Sbjct: 1011 IRQAIAQLIISYHEQT--LPSLTISIGVAAFPESGLASDTLIKSADTSLYQAKAAGRN 1066