Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., diguanylate cyclase/phosphodiesterase (RefSeq) from Shewanella amazonensis SB2B

 Score =  106 bits (265), Expect = 8e-28
 Identities = 86/317 (27%), Positives = 144/317 (45%), Gaps = 26/317 (8%)

Query: 64  IVTLLNMISLNRHRELHTQADLILSLILLTYALALVSNAQHEL--SHLLWLYPLITTLVM 121
           +V  + ++ LNR++        +L +  +   + +V   ++ L  + L+WL     ++  
Sbjct: 16  LVLAMMVLVLNRYKASFKLTHQVLVVAFIMALVGIVGLTRYGLFSAGLIWLLFSALSMTF 75

Query: 122 INPFRLGLVYSAAICLAMTASIL-----FNPAQTGSYPIAQTYFLVSLFTLTIICNTASF 176
             P     +  A +C A+  ++      F+  +T S   A    +V L  +        +
Sbjct: 76  FFPRLARKLIIAFVCTALFFALAHSRQWFDITRTVSPENAARSIVVWLSVILPFA-ILLY 134

Query: 177 FFSKAINYIHT----------LYQEGIEELAYLDPLTGLANRWSFETWATEKLKEQQSSN 226
            FSKA+   +           +  + +   A+ D LT L NR  F     +K ++   +N
Sbjct: 135 SFSKAVGDAYKEMRQDKLNLGIRNKELHSKAHTDTLTELPNRAFFYQQLLQKTQQPGLAN 194

Query: 227 TITALVFLDIDNFKRINDSYGHDVGDQVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGD 286
              AL+F+D+D FK IND++GH+ GD VL+  A R+++ +R+ D         I R  GD
Sbjct: 195 AGLALLFIDLDGFKAINDTWGHEAGDTVLRITAWRMQHRLRDSD--------IICRLGGD 246

Query: 287 EFVLLLYGVRNLRDLDNILNRICNLFVDRYPETDMLNNLTVSIGAAIYPKDAITLPELTR 346
           EFVLL   + +   L +   +I           + L NL+ SIG  + P+D   +  L  
Sbjct: 247 EFVLLCNNISSKAALASFAEQINVTVTASIDLPETLVNLSCSIGGVLLPEDGSDIDALLS 306

Query: 347 CADKAMYAAKHGGKNQY 363
            ADK MY AK  GKNQY
Sbjct: 307 LADKRMYRAKKAGKNQY 323