Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., GGDEF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  103 bits (257), Expect = 1e-26
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 12/176 (6%)

Query: 188 LYQEGIEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSYG 247
           L ++ ++  A  D LT + +R++F     + LK    SN   AL+F+DID FK IND+YG
Sbjct: 253 LQKDKLKYEAEHDSLTRVYSRYAFHRLLEQSLKRLARSNGTGALLFIDIDKFKPINDNYG 312

Query: 248 HDVGDQVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILNR 307
           H +GD VL   A R+ + +R  D         +AR  GDEF++ L  + +   L+ ++ +
Sbjct: 313 HSIGDHVLVTVAQRISHTLRESD--------MVARIGGDEFIVWLEPIEHTLQLEVVIKK 364

Query: 308 ICN-LFVD-RYPETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKN 361
           + + L +D  +    +L  + VSIGAA YP+D   + EL   AD+ MYA K G ++
Sbjct: 365 LLDKLHLDINFANVHLL--IDVSIGAACYPQDGTGIEELINVADRNMYACKRGDRD 418