Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 825 a.a., diguanylate cyclase/phosphodiesterase (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (258), Expect = 1e-26
 Identities = 87/284 (30%), Positives = 132/284 (46%), Gaps = 27/284 (9%)

Query: 115 LITTLVMINPFRLGLVYSAAICLAMTASIL-------FNPAQTGSYPIAQTYF-----LV 162
           L+  L++     L + +S  + LA  AS+L       F   +T S P   ++F     L+
Sbjct: 292 LLVGLILAAGLVLLVAWSPVVSLARHASLLPLLADHDFGSVRT-SLPRKPSWFPDEVDLI 350

Query: 163 SLFTLTIICNTASFFFSKAINYIHTLYQEGIEELAYLDPLTGLANRWSFETWATEKLKEQ 222
            L T  +  N      ++   Y H L     E LA LD LTGL N+          +   
Sbjct: 351 HLATRQLADNMQGME-NEVDEYTHEL-----ERLAMLDTLTGLPNKAMLHHELQTAIACI 404

Query: 223 QSSNTITALVFLDIDNFKRINDSYGHDVGDQVLKHFAHRLRNNIRNKDRATNQHDYSIAR 282
            S      L+FLD+D FKRIND+ GH  GD++LK  A RL N++R  D        ++ R
Sbjct: 405 ASEEDCVVLMFLDLDEFKRINDTLGHIQGDELLKIVAARLTNSVREMD--------TVFR 456

Query: 283 FAGDEFVLLLYGVRNLRDLDNILNRICNLFVDRYPETDMLNNLTVSIGAAIYPKDAITLP 342
             GDEF++LL  VR+ +++ N+++RI +              +T SIG A      +   
Sbjct: 457 QGGDEFLILLRQVRDEQEVSNVIHRIFSALQHPVVLGSHKLIVTTSIGLAYCNTSQLRAE 516

Query: 343 ELTRCADKAMYAAKHGGKNQYRYYHDAAFPPAVETVLGSQPVEA 386
           EL + AD AMY AK  G++ YR + +     A   ++  Q + A
Sbjct: 517 ELIQHADLAMYQAKSAGRSNYRVFSEEMLHQANNRLMIEQSIGA 560