Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  114 bits (286), Expect = 9e-30
 Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 193 IEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSYGHDVGD 252
           +  LAY DPLT L NR        +++   +  N+  A VF+D+D FK INDS+GH +GD
Sbjct: 448 LAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLNSQLATVFIDVDLFKHINDSFGHSIGD 507

Query: 253 QVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILNRICNLF 312
           ++L   A RLR+ ++ +D         ++R   DEFV L+ G++   D    +N++  +F
Sbjct: 508 EMLVELAKRLRSQLQEQD--------VLSRIGSDEFVALISGIQYHEDATAAINQLRQVF 559

Query: 313 VDRY-PETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKNQYRYYHDAAF 371
              +   T     LT ++G ++YP D      L R AD AMY AK  G+N Y +Y ++  
Sbjct: 560 EQPFVVSTGDHLRLTATMGVSLYPSDGSNADTLLRNADAAMYRAKSEGRNNYAFYTESLT 619

Query: 372 PPAVE 376
             ++E
Sbjct: 620 KESIE 624