Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (257), Expect = 2e-26
 Identities = 91/339 (26%), Positives = 164/339 (48%), Gaps = 29/339 (8%)

Query: 43  FALYYYFNHQPLSSGLLLLSGIVTLLNMISLNRHRELHTQADLILSLILLTYALALVSNA 102
           FA+YY     P  + L L++    L ++ ++ R R L  Q   +     L  AL +++NA
Sbjct: 152 FAMYYKEIKSPTVADLTLIAEAARLASL-AIERSRSLEFQRLAVKIFDRLPLAL-VITNA 209

Query: 103 QHELSHLLWLYPLITTL-----VMINPFRLGLVYS----AAICLAMTASILFNPAQTGSY 153
            H + +    + L+  L     +  NP +          A++   ++   ++     G  
Sbjct: 210 SHSVLYANDAFKLMVCLQPDDILAFNPEQFFSPSEPHEIASLFNHLSEGKMWQGELVGLR 269

Query: 154 PIAQTYFLVSLFTLTIICNTASFFFSKAINYIHTLYQEG--IEELAYLDPLTGLANRWSF 211
              +T++L    T+    ++A   F+   + +    +    I+  A  D LTGLANR + 
Sbjct: 270 NNGETFYLDLTVTVFRESHSADLGFAWLFSDVSERKKAAQLIKYQANNDSLTGLANRNAL 329

Query: 212 ETWATEKLKEQQSSNTIT---ALVFLDIDNFKRINDSYGHDVGDQVLKHFAHRLRNNIRN 268
                 +++E  +++++T   + + +D+DNFK++ND+YGHD GD +L     +++  +  
Sbjct: 330 ----FRQIQELINADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDVLLVQMVEQVKICL-- 383

Query: 269 KDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILNRICNLFVDRYPET-DMLNNLTV 327
                       AR  GDEF +LL GV   R+L  + ++I      RY  + D     +V
Sbjct: 384 ------DPQAVFARLGGDEFAILLPGVVTQRELSQLADKINKQVYRRYELSHDKGVYSSV 437

Query: 328 SIGAAIYPKDAITLPELTRCADKAMYAAKHGGKNQYRYY 366
           SIG A +P+DA+ L +L  CAD+AMY +K  G+N+Y ++
Sbjct: 438 SIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFF 476