Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  104 bits (259), Expect = 7e-27
 Identities = 67/179 (37%), Positives = 94/179 (52%), Gaps = 8/179 (4%)

Query: 191 EGIEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSYGHDV 250
           E ++ELA  D LT L NR+ FE      +   + SN + A++ LD+D+FK IND+ GH  
Sbjct: 136 EKLKELAEHDSLTKLMNRYGFELCLNRAIARVKRSNDLLAVILLDLDDFKAINDTLGHQT 195

Query: 251 GDQVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILNRICN 310
           GD +L   A RL   +R+ D         IAR  GDEFV+L+           + NR+  
Sbjct: 196 GDILLVKVASRLSTVLRDGD--------VIARLGGDEFVVLVTDNDYKYFPMIVANRLLK 247

Query: 311 LFVDRYPETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKNQYRYYHDA 369
            F + +   D    +  SIG A Y + A    EL +CAD AMY AK  G+NQ ++Y +A
Sbjct: 248 AFEEVFCLGDNDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEA 306