Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  126 bits (317), Expect = 4e-33
 Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 8/177 (4%)

Query: 190  QEGIEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSYGHD 249
            +E +  LA  D LTGL NR  F+      + +   SN I AL+FLD+D FK INDS GH 
Sbjct: 1075 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHH 1134

Query: 250  VGDQVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILNRIC 309
            +GD +LK  AHRL++ +R  D        ++AR  GDEF ++L GV   +    I  ++ 
Sbjct: 1135 IGDLLLKAVAHRLQSAVREGD--------TVARLGGDEFTIILEGVAKTKAATLISEKVL 1186

Query: 310  NLFVDRYPETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKNQYRYY 366
              F   +   D   N++ SIG ++YP DA  +  L + AD AMY AK  G+N +++Y
Sbjct: 1187 KAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFY 1243