Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., diguanylate cyclase with PAS/PAC sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  110 bits (275), Expect = 1e-28
 Identities = 65/171 (38%), Positives = 93/171 (54%), Gaps = 8/171 (4%)

Query: 190 QEGIEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSYGHD 249
           +E +  +A+ D LT L NR  F T   + +   Q S+ I A++FLD+DNFK +ND +GHD
Sbjct: 494 EEHLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDGIFAILFLDLDNFKPVNDEFGHD 553

Query: 250 VGDQVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILNRIC 309
           VGD++L+  A RL ++IR  D        +I R  GDEFV+LL  + N   +  ++ +I 
Sbjct: 554 VGDKLLQEVAKRLTSSIRQID--------TITRLGGDEFVILLEHLPNEESVPILIRKIT 605

Query: 310 NLFVDRYPETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGK 360
                 Y       ++ VSIG+AIYP   I    L   AD+AMY  K   K
Sbjct: 606 QALTAPYIIHKHKLHIGVSIGSAIYPCHGIDAKSLINYADQAMYVVKKANK 656