Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 878 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  117 bits (294), Expect = 1e-30
 Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 9/178 (5%)

Query: 193 IEELAYLDPLTGLANRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSYGHDVGD 252
           +  LAY DPLT L NR        ++L+  +  N   A VF+D+D FK INDS+GH +GD
Sbjct: 448 LAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGHSIGD 507

Query: 253 QVLKHFAHRLRNNIRNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILNRICNLF 312
           ++L   A RLR+ ++ +D         ++R  GDEFV L+ G+++  D    +N++  +F
Sbjct: 508 EMLVELAKRLRSQLQEQD--------VLSRIGGDEFVALISGIQSHEDAAAAINQLRQVF 559

Query: 313 VDRY-PETDMLNNLTVSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKNQYRYYHDA 369
              +   T     LT S+G +IYP D      L R AD AMY AK  G+N + +Y ++
Sbjct: 560 EQPFVVSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTES 617