Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., regulatory protein, LysR:LysR, substrate-binding protein from Pseudomonas syringae pv. syringae B728a

 Score =  102 bits (253), Expect = 2e-26
 Identities = 79/296 (26%), Positives = 124/296 (41%), Gaps = 3/296 (1%)

Query: 2   RKLAPLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVVL 61
           R L PL +L +F + A  GS++ AA+ LNV+H A+S+ +K LE  LG  LF + GR + L
Sbjct: 19  RDLPPLNALRAFESTARLGSVSQAAEQLNVTHGAVSRQLKVLEEHLGTSLFSKDGRGLKL 78

Query: 62  NSAGKRYYQKVAPALEQIVEATESLLKPMHSNRITLNMINSLALHWWIPRFSSFQAFAPD 121
             AG R       A +++      L +        L    SL   W+IPR S   A  PD
Sbjct: 79  TDAGIRLRDVSGDAFDRLRGVCAELSRGSADAPFVLGCSGSLLARWFIPRLSRLNAELPD 138

Query: 122 VDVRISTLTGAFSLEEQGVDVALIHGQWREWQDYYCEQLADDELVMVISQNMIS-ANMPL 180
           + + +S   G       G+D  LI  +     D    +LA + +  V+S        +  
Sbjct: 139 LRLHLSAGEGDLDPRRPGLDALLIFAEPPWPADMQVFELASERIGPVLSPRFARFERLCD 198

Query: 181 KQALAQFPAIFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLGVFVT 240
             A A      +    R   W  W Q N + P   +    F      L+A ++GLG+ + 
Sbjct: 199 APAEALLEESLLQTTSRPQAWPSWAQQNGIDPQSLRYGQGFEHLYYLLEAAVAGLGIAIA 258

Query: 241 HKLFIKQELESGILKEIGQPVTHPDQGYYFACRPEALRSEAVLTLRSWLRNEFQKN 296
            +  +  +L++G L         P Q   +   P          L  WL+NE +++
Sbjct: 259 PEPLVIDDLKAGRLAAPWGFSETPAQLALWV--PRRAADGRAQQLAQWLKNELKRS 312