Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  133 bits (335), Expect = 4e-36
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 2/299 (0%)

Query: 2   RKLAPLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVVL 61
           R+L PL ++ +F A A   S T AA+ L V+ +A+S  IK+LE  LG  LF R  R ++L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 62  NSAGKRYYQKVAPALEQIVEATESLLKPMHSNRITLNMINSLALHWWIPRFSSFQAFAPD 121
              G+ Y+  +     Q+ +AT+ LL       +T++M  S A+ W +PR + F    PD
Sbjct: 63  TEEGQSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKNPD 122

Query: 122 VDVRISTLTGAFSLEEQGVDVALIHGQWREWQDYYCEQLADDELVMVISQNMISANMPLK 181
           +DVRI  +          VDVA+ +GQ   W     ++L ++ L+ V S  +++ + PL+
Sbjct: 123 IDVRIKAVDSEEGSLTDDVDVAIYYGQ-GSWPGLRADKLRNEVLIPVCSPMLLNGHKPLE 181

Query: 182 QALAQFPAIFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLGVFVTH 241
                     +++  R  DW  W +   VT     +   FS S+  LQA   G GV + +
Sbjct: 182 TPADLKHHTLLHDMSRH-DWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 242 KLFIKQELESGILKEIGQPVTHPDQGYYFACRPEALRSEAVLTLRSWLRNEFQKNQNRQ 300
            +  + ++++G L    Q V      YY  C+        ++  R W+ + F +    +
Sbjct: 241 SVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWMLDMFAEESRSE 299