Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  129 bits (325), Expect = 6e-35
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 2/299 (0%)

Query: 2   RKLAPLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVVL 61
           R+L PL ++ +F A A   S T AA+ L V+ +A+S  IK+LE  LG  LF R  R ++L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLL 62

Query: 62  NSAGKRYYQKVAPALEQIVEATESLLKPMHSNRITLNMINSLALHWWIPRFSSFQAFAPD 121
              G+ Y+  +     Q+ +AT+ LL       +T++   S A+ W +PR ++F    PD
Sbjct: 63  TEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENNPD 122

Query: 122 VDVRISTLTGAFSLEEQGVDVALIHGQWREWQDYYCEQLADDELVMVISQNMISANMPLK 181
           +DVRI  +    S     VDVA+ +G    W     ++L ++ L+ V S  ++S   PL 
Sbjct: 123 IDVRIKAVDDETSSLTDDVDVAIYYGM-GNWPGLRADKLRNEVLIPVCSPMLLSGPKPLS 181

Query: 182 QALAQFPAIFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLGVFVTH 241
           Q         +++  R  DW  W +   +      +   FS S+  LQA   G GV + +
Sbjct: 182 QPSDLKHHTLLHDSSRH-DWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 242 KLFIKQELESGILKEIGQPVTHPDQGYYFACRPEALRSEAVLTLRSWLRNEFQKNQNRQ 300
            +  + ++++G L      V      YY  C+        ++  R W+ + F++    +
Sbjct: 241 SVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWMLDMFEEESRSE 299