Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  119 bits (297), Expect = 1e-31
 Identities = 76/295 (25%), Positives = 142/295 (48%), Gaps = 6/295 (2%)

Query: 1   MRKLAPLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVV 60
           M    PL++L  F A A   S +LAA+ L ++ SA+SQ IK LE    + LF+R G ++ 
Sbjct: 1   MNNNIPLRALQIFEACARLESCSLAANELCITQSAVSQQIKQLEDYFLEKLFYRQGGKIN 60

Query: 61  LNSAGKRYYQKVAPALEQIVEATESLLKPMHSNRITLNMINSLALHWWIPRFSSFQAFAP 120
           L  AG    +++AP    +     SL++ M +  + ++   SLA  W +P+    +   P
Sbjct: 61  LTEAGIELRERLAPVFYDLNSVCSSLVQNM-AGEVRVHSYTSLAARWLVPKMEQLRQMYP 119

Query: 121 DVDVRISTLTGAFSLEEQGVDVALIHGQWREWQD-YYCEQLADDELVMVISQNMISANMP 179
           ++++ +        + +   D+ ++    RE QD Y    L  ++LV   S + ++ +  
Sbjct: 120 ELNINVGMFQNDIEMSDMIADIFIV---TRECQDGYTIIPLVTEKLVAFCSPDYLAQSQG 176

Query: 180 LKQA-LAQFPAIFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLGVF 238
           +  A L Q   ++  +     DWD W + N +   P Q+ + F+ +  A+QA + G G+ 
Sbjct: 177 ISLATLDQHCLLYSKHKDYGVDWDTWFRNNDIAISPNQKKIFFNHNMLAVQAAIYGQGIV 236

Query: 239 VTHKLFIKQELESGILKEIGQPVTHPDQGYYFACRPEALRSEAVLTLRSWLRNEF 293
           +  +  +K EL+SG L ++  P       YY A +    R   ++ +  W+ + +
Sbjct: 237 LGLEQTLKVELDSGNLVKLDLPTCLSGLTYYIAYKTSKKRDARIMRIVDWIIDNY 291