Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., glycine cleavage system transcriptional activator, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (323), Expect = 1e-34
 Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 2/299 (0%)

Query: 2   RKLAPLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVVL 61
           R+L PL ++ +F A A   S T AA+ L V+ +A+S  IK+LE  LG  LF R  R ++L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 62  NSAGKRYYQKVAPALEQIVEATESLLKPMHSNRITLNMINSLALHWWIPRFSSFQAFAPD 121
              G+ Y+  +     Q+ +AT+ LL       +T++M  S A+ W +PR S F    P+
Sbjct: 63  TEEGQSYFLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPE 122

Query: 122 VDVRISTLTGAFSLEEQGVDVALIHGQWREWQDYYCEQLADDELVMVISQNMISANMPLK 181
           +DVRI  +    S     VDVA+ +G    W     ++L ++ L+ V S  +++   PL 
Sbjct: 123 IDVRIKAVDTEASSLTDDVDVAIYYG-LGNWPGLRADKLRNEVLIPVCSPMLLNGPKPLS 181

Query: 182 QALAQFPAIFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLGVFVTH 241
           +         +++  R  DW  W +   +T     +   FS S+  LQA   G GV + +
Sbjct: 182 KPEDLKHHTLLHDMSRH-DWQAWFRQCGITDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 242 KLFIKQELESGILKEIGQPVTHPDQGYYFACRPEALRSEAVLTLRSWLRNEFQKNQNRQ 300
            +  + ++++G L    Q V      YY  C+        V+  R W+ + F +    +
Sbjct: 241 SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFAEESRSE 299