Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (266), Expect = 5e-28
 Identities = 86/305 (28%), Positives = 138/305 (45%), Gaps = 10/305 (3%)

Query: 1   MRKLAPLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVV 60
           MR + P+KS+  F A A   S  LAA  LNV+  AIS  I +LE  +G+ +F R  R+V 
Sbjct: 1   MRVIPPIKSIIYFEAAARLQSFKLAAMELNVTPGAISHQISTLEDFIGKKVFERGSRRVT 60

Query: 61  LNSAGKRYYQKVAPALEQIVEATESLLKPMHSNRITLNMINSLALHWWIPRFSSFQAFAP 120
           L   G RYY +++  L+ + EAT  L       +I + +  SL  +W +PR    +    
Sbjct: 61  LTYCGLRYYSRISIILQNMEEATVDLGIEGSKPKIKIAIPPSLLKNWLLPRLVDDKLKDL 120

Query: 121 DVDVRISTLTGAFSLEEQGVDVALIHGQWREWQDYYCEQLADDELVMVISQNMISANMP- 179
           +  V            +  +D+A+ +G +  W + Y   L  +E++ V   N   +    
Sbjct: 121 NRSVEFIDTLDYLEFSKCDLDLAIRYG-YDSWDNLYSVFLFHEEMIPVCHPNYFISEFTD 179

Query: 180 -LKQALAQFPAIFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLGVF 238
             ++ +     IF NN  R   WDI  Q   +     Q  L F  S QA++A + G G+ 
Sbjct: 180 FTQEIIDNHTLIFTNN--RLVQWDIVMQYFGLERKSTQSKLIFQNSIQAIEAAIQGAGIA 237

Query: 239 VTHKLFIKQELESGIL---KEIGQPVTHPDQGYYFACRPEALRSEAVLTLRSWLRNEFQK 295
             +++ + +EL +G L    +I  P  H    Y+     E ++ EA   L   +  EF K
Sbjct: 238 YVNRILVSKELSNGRLIQPFDIYMP-KHKSPAYHLVSTYEHMQDEATFKLYQTIL-EFAK 295

Query: 296 NQNRQ 300
           +   Q
Sbjct: 296 STPHQ 300