Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  108 bits (269), Expect = 2e-28
 Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 1   MRKLAPLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVV 60
           MRKL PL++L  F   A     + AA  L ++ SA+S  ++ LE   G+ LF R GR++ 
Sbjct: 5   MRKLPPLRALQVFETAARQQHFSKAATELCITQSAVSHQVRVLEEYFGEQLFDRQGRKLQ 64

Query: 61  LNSAGKRYYQKVAPALEQIVEATESL---LKPMHSNRITLNMINSLALHWWIPRFSSFQA 117
           L   G    Q +   LE+I      L   ++   + ++ L + +S A+ W IPR + F+ 
Sbjct: 65  LTPKG----QSLFIELERIFNELSDLNLKIRDTPNQQLCLAVYSSFAVKWLIPRLADFRR 120

Query: 118 FAPDVDVRISTLTGAFSLEEQGVDVALIHGQWREWQDYYCEQLADDELVMVISQNMISAN 177
             P V +R+  +T    L     D+  I G+  + + Y+ + L  + L+ V S N+    
Sbjct: 121 QYPSVKIRLEMITQDPDLSTSTADI-FIAGKLNQ-RGYWQQLLHKERLIPVCSPNLYPKW 178

Query: 178 MPLKQALAQFPA-IFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLG 236
             +     Q  A + V+      DW  W  A+++    +Q++L FS    A++A ++G G
Sbjct: 179 REINLGNFQQQALLIVDEGPLGLDWHKWSSAHKIPLNNEQQHL-FSHIVMAIEAAIAGQG 237

Query: 237 VFVTHKLFIKQELESGILKEIGQPVTHPDQGYYFACRPEALRSEAVLTLRSWLRNE 292
           + +     +  ++ +G L  +  P  H    + F C+   L   A+    SWL+++
Sbjct: 238 IALAPDFMVAGDISTGRLVAVNLPDVHTGFEFCFLCKQRRLNEPAIAAFSSWLKSQ 293