Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  128 bits (321), Expect = 2e-34
 Identities = 86/300 (28%), Positives = 142/300 (47%), Gaps = 4/300 (1%)

Query: 2   RKLAPLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVVL 61
           R+L PL ++ +F A A   S T AA+ L V+ +A+S  IK+LE  LG  LF R  R ++L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 62  NSAGKRYYQKVAPALEQIVEATESLLKPMHSNRITLNMINSLALHWWIPRFSSFQAFAPD 121
              G+ Y+  +     Q+ +AT+ LL       +T++M  S A+ W +PR S F    PD
Sbjct: 63  TEEGQSYFLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPD 122

Query: 122 VDVRISTLTGAFSLEEQGVDVALIHGQWREWQDYYCEQLADDELVMVISQNMISANMPL- 180
           +DVRI  +    S     VDVA+ +G    W     ++L ++ L+ V S  +++   PL 
Sbjct: 123 IDVRIKAVDTEASSLTDDVDVAIYYG-LGNWPGLRADKLRNEVLIPVCSPMLLNGPKPLS 181

Query: 181 KQALAQFPAIFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLGVFVT 240
           K    ++  +  +  R   DW  W +   +      +   FS S+  LQA   G GV + 
Sbjct: 182 KPEDLKYHTLLHDMSRH--DWQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVALG 239

Query: 241 HKLFIKQELESGILKEIGQPVTHPDQGYYFACRPEALRSEAVLTLRSWLRNEFQKNQNRQ 300
           + +  + ++++G L    Q V      YY  C+        V+  R W+ + F +    +
Sbjct: 240 YSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFAEESRSE 299