Pairwise Alignments

Query, 457 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  102 bits (255), Expect = 4e-26
 Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 294 ALHDPLTHLPNRRYFIYTIEHYFENAKRSHSEGNFALLNIDIDRFKSINDSHGHSAGDKV 353
           ++HD LT LPNR      ++       + HS     LL +D+D FK INDS GH AGD V
Sbjct: 430 SMHDALTGLPNRNKLARHLDDAL--VAKEHS-APLTLLMVDLDNFKPINDSLGHPAGDAV 486

Query: 354 LVACAERIKSSLRVSDLVARIGGDEFLVLIPRIHREQDVLKVSDNILKRISETPIVYDDK 413
           L+  A+R++   R  DLVAR+GGDEF+V++  +    ++ +  + ++  + + PI+Y+  
Sbjct: 487 LLEVAQRLRDCTREQDLVARLGGDEFVVVLNGMEHTTEIDRFCERLIDSLQQ-PILYETH 545

Query: 414 LIHVRVSIGYALYDQSFATPDEMFKLADERMYTAK 448
            +H+  SIG A+  +    P E+ + AD  +Y AK
Sbjct: 546 SLHIGASIGIAVSRRQGYVPGELIRCADIALYQAK 580



 Score = 25.4 bits (54), Expect = 0.008
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 12/78 (15%)

Query: 31  ISHTRDLQEGLRQQAKEDLSIVRFQLEAEILG-DIYTVKGLT-----TLLTLDPDLNIYQ 84
           I H R L+  LRQ  K++  ++ FQ    + G +I  V+ L      T   L PD  I  
Sbjct: 598 IQHRRQLESDLRQAVKKNEFVLHFQPRYTVDGREIVAVEALVRWQHPTQGLLSPDAFIPL 657

Query: 85  WE------PLSAAVIRNS 96
            E      PLS  V+R +
Sbjct: 658 AEQTDLIVPLSRWVLREA 675