Pairwise Alignments

Query, 457 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (287), Expect = 8e-30
 Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 2/162 (1%)

Query: 294 ALHDPLTHLPNRRYFIYTIEHYFENAKRSHSEGNFALLNIDIDRFKSINDSHGHSAGDKV 353
           A HD LT LPNR  F+  + H  ++ +R HS   FALL ID+DRFK IND+ GH  GD+ 
Sbjct: 452 AKHDALTGLPNRAMFMERLNHAIKHVRR-HSLEQFALLFIDLDRFKLINDTMGHLEGDRF 510

Query: 354 LVACAERIKSSLRVSDLVARIGGDEFLVLIPRIHREQDVLKVSDNILKRISETPIVYDDK 413
           L+  A R++S +R +D +AR+GGDEF++L+  I+   D   V++ ++++IS++   +   
Sbjct: 511 LIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVAERVIRKISQS-YHFGTI 569

Query: 414 LIHVRVSIGYALYDQSFATPDEMFKLADERMYTAKRRQNPLY 455
             H   SIG  +      T + M + AD  MY AK      Y
Sbjct: 570 EFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCY 611