Pairwise Alignments

Query, 457 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 937 a.a., extracellular solute-binding proteins, family 3/GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  116 bits (290), Expect = 4e-30
 Identities = 79/232 (34%), Positives = 119/232 (51%), Gaps = 15/232 (6%)

Query: 233 QENVYFPYGSWRIAVAEKQDLLQQLSWYTRNAVRLLGYSVLLVLMAGFGVIMR---LYQV 289
           Q+ +Y  + S+ IA  + Q     L W        LG S+ +V++      ++     ++
Sbjct: 711 QQQIYSHWVSFTIATDDGQ----YLRWIRYLLFGALGLSLFMVVVLVVNRRLKREITRRI 766

Query: 290 AEERAL-----HDPLTHLPNRRYFIYTIEHYFENAKRSHSEGNFALLNIDIDRFKSINDS 344
           A E+ L     HD LT LPNR      +     + +R  S  +FALL ID+D FK +ND 
Sbjct: 767 AAEKRLQHVASHDVLTQLPNRGLLDDRLSQALLSHRRDQS--HFALLFIDLDGFKQVNDQ 824

Query: 345 HGHSAGDKVLVACAERIKSSLRVSDLVARIGGDEFLVLIPRIHREQDVLKVSDNILKRIS 404
           HGH  GD +L+  A  +  ++R SD VAR GGDEF++L+ R+       +V+DNIL  +S
Sbjct: 825 HGHPIGDALLLRVAGLLTQAIRHSDTVARFGGDEFVILLNRVQDLDAATQVADNILHSLS 884

Query: 405 ETPIVYDDKLIHVRVSIGYALYDQSFATPDEMFKLADERMYTAKRRQNPLYR 456
            +P   +   + + VSIG  +Y +   T  E+ K AD+ MY AK      YR
Sbjct: 885 -SPFTIEGVTVEIAVSIGVVIYPRDGDTAIELLKKADQLMYQAKTVGGRCYR 935